SILENT_MODE BLOCK_FILE jp_ub_nxKN.concise.blc MAX_NSEQ 863 MAX_INPUT_LEN 865 OUTPUT_FILE jp_ub_nxKN.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 234 852 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 853 234 862 H SPACE SUB_CHARS 1 853 234 862 E SPACE SUB_CHARS 1 853 234 862 - SPACE STRAND 5 856 12 COLOUR_TEXT_REGION 5 856 12 856 51 STRAND 24 856 26 COLOUR_TEXT_REGION 24 856 26 856 51 STRAND 31 856 36 COLOUR_TEXT_REGION 31 856 36 856 51 STRAND 92 856 98 COLOUR_TEXT_REGION 92 856 98 856 51 STRAND 104 856 110 COLOUR_TEXT_REGION 104 856 110 856 51 STRAND 114 856 119 COLOUR_TEXT_REGION 114 856 119 856 51 STRAND 123 856 127 COLOUR_TEXT_REGION 123 856 127 856 51 STRAND 155 856 159 COLOUR_TEXT_REGION 155 856 159 856 51 STRAND 169 856 173 COLOUR_TEXT_REGION 169 856 173 856 51 STRAND 179 856 184 COLOUR_TEXT_REGION 179 856 184 856 51 STRAND 226 856 232 COLOUR_TEXT_REGION 226 856 232 856 51 HELIX 42 856 56 COLOUR_TEXT_REGION 42 856 56 856 50 HELIX 63 856 82 COLOUR_TEXT_REGION 63 856 82 856 50 HELIX 134 856 142 COLOUR_TEXT_REGION 134 856 142 856 50 HELIX 145 856 147 COLOUR_TEXT_REGION 145 856 147 856 50 HELIX 194 856 201 COLOUR_TEXT_REGION 194 856 201 856 50 HELIX 206 856 219 COLOUR_TEXT_REGION 206 856 219 856 50 STRAND 5 861 12 COLOUR_TEXT_REGION 5 861 12 861 51 STRAND 24 861 26 COLOUR_TEXT_REGION 24 861 26 861 51 STRAND 31 861 36 COLOUR_TEXT_REGION 31 861 36 861 51 STRAND 92 861 99 COLOUR_TEXT_REGION 92 861 99 861 51 STRAND 104 861 110 COLOUR_TEXT_REGION 104 861 110 861 51 STRAND 114 861 119 COLOUR_TEXT_REGION 114 861 119 861 51 STRAND 123 861 128 COLOUR_TEXT_REGION 123 861 128 861 51 STRAND 155 861 160 COLOUR_TEXT_REGION 155 861 160 861 51 STRAND 168 861 173 COLOUR_TEXT_REGION 168 861 173 861 51 STRAND 180 861 184 COLOUR_TEXT_REGION 180 861 184 861 51 STRAND 226 861 232 COLOUR_TEXT_REGION 226 861 232 861 51 HELIX 42 861 56 COLOUR_TEXT_REGION 42 861 56 861 50 HELIX 63 861 82 COLOUR_TEXT_REGION 63 861 82 861 50 HELIX 134 861 148 COLOUR_TEXT_REGION 134 861 148 861 50 HELIX 194 861 201 COLOUR_TEXT_REGION 194 861 201 861 50 HELIX 206 861 219 COLOUR_TEXT_REGION 206 861 219 861 50 STRAND 5 862 12 COLOUR_TEXT_REGION 5 862 12 862 51 STRAND 24 862 27 COLOUR_TEXT_REGION 24 862 27 862 51 STRAND 31 862 36 COLOUR_TEXT_REGION 31 862 36 862 51 STRAND 92 862 96 COLOUR_TEXT_REGION 92 862 96 862 51 STRAND 105 862 109 COLOUR_TEXT_REGION 105 862 109 862 51 STRAND 114 862 119 COLOUR_TEXT_REGION 114 862 119 862 51 STRAND 123 862 126 COLOUR_TEXT_REGION 123 862 126 862 51 STRAND 157 862 157 COLOUR_TEXT_REGION 157 862 157 862 51 STRAND 170 862 174 COLOUR_TEXT_REGION 170 862 174 862 51 STRAND 179 862 183 COLOUR_TEXT_REGION 179 862 183 862 51 STRAND 226 862 232 COLOUR_TEXT_REGION 226 862 232 862 51 HELIX 42 862 56 COLOUR_TEXT_REGION 42 862 56 862 50 HELIX 63 862 82 COLOUR_TEXT_REGION 63 862 82 862 50 HELIX 133 862 138 COLOUR_TEXT_REGION 133 862 138 862 50 HELIX 194 862 201 COLOUR_TEXT_REGION 194 862 201 862 50 HELIX 206 862 219 COLOUR_TEXT_REGION 206 862 219 862 50