SILENT_MODE BLOCK_FILE jp_vM9Pst5.concise.blc MAX_NSEQ 240 MAX_INPUT_LEN 242 OUTPUT_FILE jp_vM9Pst5.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 158 229 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 230 158 239 H SPACE SUB_CHARS 1 230 158 239 E SPACE SUB_CHARS 1 230 158 239 - SPACE STRAND 5 233 8 COLOUR_TEXT_REGION 5 233 8 233 51 HELIX 9 233 9 COLOUR_TEXT_REGION 9 233 9 233 50 HELIX 13 233 52 COLOUR_TEXT_REGION 13 233 52 233 50 HELIX 62 233 85 COLOUR_TEXT_REGION 62 233 85 233 50 HELIX 92 233 118 COLOUR_TEXT_REGION 92 233 118 233 50 HELIX 122 233 127 COLOUR_TEXT_REGION 122 233 127 233 50 HELIX 130 233 156 COLOUR_TEXT_REGION 130 233 156 233 50 STRAND 4 238 7 COLOUR_TEXT_REGION 4 238 7 238 51 HELIX 8 238 10 COLOUR_TEXT_REGION 8 238 10 238 50 HELIX 13 238 52 COLOUR_TEXT_REGION 13 238 52 238 50 HELIX 60 238 85 COLOUR_TEXT_REGION 60 238 85 238 50 HELIX 93 238 118 COLOUR_TEXT_REGION 93 238 118 238 50 HELIX 122 238 126 COLOUR_TEXT_REGION 122 238 126 238 50 HELIX 130 238 156 COLOUR_TEXT_REGION 130 238 156 238 50 STRAND 6 239 8 COLOUR_TEXT_REGION 6 239 8 239 51 HELIX 14 239 52 COLOUR_TEXT_REGION 14 239 52 239 50 HELIX 62 239 85 COLOUR_TEXT_REGION 62 239 85 239 50 HELIX 92 239 118 COLOUR_TEXT_REGION 92 239 118 239 50 HELIX 122 239 127 COLOUR_TEXT_REGION 122 239 127 239 50 HELIX 131 239 156 COLOUR_TEXT_REGION 131 239 156 239 50