SILENT_MODE
BLOCK_FILE jp_Shms8KY.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_Shms8KY.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 131 24   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 25 131 34 H SPACE
SUB_CHARS 1 25 131 34 E SPACE
SUB_CHARS 1 25 131 34 - SPACE
HELIX 8 28 8
COLOUR_TEXT_REGION 8 28 8 28 50
HELIX 10 28 34
COLOUR_TEXT_REGION 10 28 34 28 50
HELIX 44 28 56
COLOUR_TEXT_REGION 44 28 56 28 50
HELIX 60 28 72
COLOUR_TEXT_REGION 60 28 72 28 50
HELIX 79 28 90
COLOUR_TEXT_REGION 79 28 90 28 50
HELIX 92 28 93
COLOUR_TEXT_REGION 92 28 93 28 50
HELIX 98 28 106
COLOUR_TEXT_REGION 98 28 106 28 50
HELIX 113 28 119
COLOUR_TEXT_REGION 113 28 119 28 50
HELIX 6 33 34
COLOUR_TEXT_REGION 6 33 34 33 50
HELIX 43 33 56
COLOUR_TEXT_REGION 43 33 56 33 50
HELIX 60 33 72
COLOUR_TEXT_REGION 60 33 72 33 50
HELIX 79 33 89
COLOUR_TEXT_REGION 79 33 89 33 50
HELIX 92 33 93
COLOUR_TEXT_REGION 92 33 93 33 50
HELIX 98 33 107
COLOUR_TEXT_REGION 98 33 107 33 50
HELIX 113 33 119
COLOUR_TEXT_REGION 113 33 119 33 50
HELIX 10 34 33
COLOUR_TEXT_REGION 10 34 33 34 50
HELIX 44 34 56
COLOUR_TEXT_REGION 44 34 56 34 50
HELIX 60 34 72
COLOUR_TEXT_REGION 60 34 72 34 50
HELIX 79 34 92
COLOUR_TEXT_REGION 79 34 92 34 50
HELIX 98 34 104
COLOUR_TEXT_REGION 98 34 104 34 50
HELIX 112 34 119
COLOUR_TEXT_REGION 112 34 119 34 50