QUERY : HYVEPKFLNKAFEVALKVQIIAGFDRGLVKWLRVHGRTLSTVQKKALYFVNRRYMQTHWANYMLWINKKIDALGRTPVVGDYTRLGAEIGRRIDMAYFYDFLKDKNMIPKYLPYMEEINRMRPADVPVKYM : QUERY
UniRef90_Q25078 : HFVPHTHVARPFEVALKVQIIAGFDRKLVAWLQRHGRHLSAIQKKSLYFVNRRYMQTHWQAYMVWIAKQVAKLGRAPTVNDYSRIGAEIGRRIPLEVTYSFLVRRNLIPRMRQFMRDLIAKPVQDIPIR-- : UniRef90_Q25078
UniRef90_Q25156 : HFVQHQYVDKAFEIALKEEIVAGFDRTLVKWLRVHGRGLTPVQKKALYFVNRRYMQTHWQNYMLWIVKKIDALGRTPVVGDYRRLGAEIGRRIDMDYFYNFLKNRNMIPKYMPYMEELNRMPARDIPVK-- : UniRef90_Q25156
UniRef90_Q27286 : -YIPRTRLNRAFEVALKVQIIAGFDRKLTSWLGRHGSRLSAIQRKTLYFVNRRYLQTHWSAYMVWINKRIAALGRTATTADYNNLGAEIGRRIPMEVTYSFLVRRNLIPKWRPYMAAIMAKSAADLEV--- : UniRef90_Q27286
UniRef90_Q25119 : -FVPHRRLARQFEVALKVQIIAGFDRKLSGWLTRHGSRLSPIQRKTLYFVNRRYMQTLWQNYFRFVARRIGKLGRAPNVNDYNAVGAEIGRRVPLEVTYSFLVRRNLIPTWRQYMANLLARRVEDIPVR-- : UniRef90_Q25119
UniRef90_Q25098 : YFIRHQYLAKPFEVALKVQIVAGFDRKLTAWLRRHGSHRSAIKRKTLYFVNRRYMQTHWQAYMVWIVRKIKALGRPPTVADYTALGAEIGRRIPLEVTYSFLVRRNLIPSWRPYMARLMAKRPADIPIR-- : UniRef90_Q25098
UniRef90_P19448 : -FIPHKYIRKEFEVALKVEIIAGFDRTLVKWLRVHGGRLSTVQKKALYFVNRRYMQTHWQNYMLWIVRKTDALGRPPVVADYSRLGAEIGRRIDMAYFYNFLNGRNMIPKYLPYMEEINRMRPADVPV--- : UniRef90_P19448
UniRef90_A7L819 : HIQHSSGLARQFEVALKVQIIAGFDKKLATWIHNHGSALSAIQKKTLYFVNRRYMQTHWKGYMLFVDEKIKKLGRPPNVNDYTAIGAEIGRRVPLQITYPILIKYKLLPKWRPYMAVIMGKHVQDIPVEY- : UniRef90_A7L819
UniRef90_Q25187 : -FIPRKRLPMAHEVALKVEIIAGFNKKLDIWLARHGSRLSPIQKKTLYFVNRRYMQTHWSNYMLWVKRRINSLGRPGTTADYRNLGAEIGRRVPLELTYSFLVRRNLIPQWRQYMADLMARRVADIPV--- : UniRef90_Q25187
UniRef90_E7CSC0 : -FIPRRSLARPYEVAMKTQIIAGFDRKLVSWLARHGSGLNAIQRKTLYFVNRRHMQTYWPSYTRYARRQTARLGRPATVNDYRRIGAEIGRRIPMELSYEVLVRRNMIPAWRQYMADLMAKRVEDIPV--- : UniRef90_E7CSC0
UniRef90_Q25036 : HFTAHRRISRRFEAALKVQIILGFDKKLATWLARYGKNLSAIHKKTLYFYNRRHMQTHWQSYMRFTEKDIRKLGRPPNSNDYTRIGAEIGRRIPIELMYSFMVRRNMIPRWRPYMGVLLSKRKEDIPV--- : UniRef90_Q25036
UniRef90_Q01381 : -FVRYHYINKAYEVTMKIQIISGFDRQLTAWLRVHGRRLTNNQKKTLFFVNRRYMQTHWQNYMLWVKRKIKALGRPAAVGDYTRLGAEIGRRVDMVFFYNFLSGRKMIPPYSAYMAKLNALRPADVPVK-- : UniRef90_Q01381
UniRef90_Q25075 : -YPPGTFLSKAKLSALKTQIIAGFDRKLASWLRRHGNRLSAIQKKTLYFVNRRYMQTHWRSYMKFVRNQMKLLGRAETTADYNRVGAAIGKRIPLEITYSFLVRRNLIPKWKPYMARLMARRPGDIP---- : UniRef90_Q25075
UniRef90_I2BK17 : ---------------IKTGIIKEMDHKAAMYVRKHPS--ARPYEPFMKYMNKQKLYTTWNNWSTWCAKEIAKMGRKPNSRDYENLGRRLGKLAYMDFAYSVVARLRM--QLNPAQRRFLYIKPADLPVRTV : UniRef90_I2BK17
UniRef90_I2BK16 : ---------------IKTYIIKEMDHKAHMYIRKHPEG--RPYLPFMRFMNKQKLYMTWNNWSTWCSKEIAKMNRRATARDYENLGRRLGKIVYMDLAYRVVVQLRMQP--NPDQRRFLNLRAADLPIRT- : UniRef90_I2BK16
UniRef90_Q9Y1I5 : ---------------IKGGMFLEMDNVAKRFCRKHPS--AKPYFQYMRYLNRQRIYGNWNNYSQWARGLVQKLGRKPTSREFANIGRKMGKEMDCEAYFRIVVRYRL--KLNPDKRKLLNTPAIDFPIRTL : UniRef90_Q9Y1I5
UniRef90_I2BK21 : ---------------IKAGMFHEMDHKARVYCRS--RPKARPYLDYMRYIHRRMIYLNWNNYSQWARMLVQKLRRKPSSRDYTNIGKVMGKKIYTNGYYPEIVKLRC--KFNPDKRNFLNTPAVDLPLRTL : UniRef90_I2BK21
UniRef90_Q9Y1I6 : ---------------MKTAIVKALHKKATVWCRQHPHG--RPYEPFMRFMNVQRVYTNWNNMSTWAVKELRKMHRRPVTRDYENLGRRIGEHTYMRHVYEVVSEMRIRPT--PDQIRFTNIKPANLPLRT- : UniRef90_Q9Y1I6
UniRef90_Q9Y1I8 : ------------EVWIKGTLIHELDKKANAYCQKHPTI--RMYRDYMLYQGRQKLYNSWNNWSQWFAREIKKLGRSPTRNDYVNLARRLGRDVFMRHLYEAAWKYKL--KLNPDKRNMLRIPIYKFPVR-- : UniRef90_Q9Y1I8
UniRef90_I2BK19 : ---------------VKEAIVRTMDRFVDAYVRKHPS--SRRYKDYMRYMNRRKVYNTWNNWSNWCINRIRELNRRPNAGDFRRFGVRLANRYQMNFMYDVVVKER--SQLNANQRNFLNTPPARMPIR-- : UniRef90_I2BK19
UniRef90_Q9Y1I7 : --------------WIKRGAVEEMDKQADKYVRERPNLRSYI--PMFKYFSKMKVYNMWPNWSNWCATWLRRLNRTPHARDYAACGKIRGREAYMPHLYDVAVRQN-YKTLNPYEKKILATAPIHLPIR-- : UniRef90_Q9Y1I7
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121------- :
OrigSeq : HYVEPKFLNKAFEVALKVQIIAGFDRGLVKWLRVHGRTLSTVQKKALYFVNRRYMQTHWANYMLWINKKIDALGRTPVVGDYTRLGAEIGRRIDMAYFYDFLKDKNMIPKYLPYMEEINRMRPADVPVKYM : OrigSeq
Jnet : -------H-HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH---HHHHHHHHHHHHH------HHHHHHHHHHHH-HH----HHHHHHHHH------HHHHHHH------------ : Jnet
jhmm : -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH---HHHHHHHHHHHHH------HHHHHHHHHHH--HH----HHHHHHHHHH-----HHHHHHH------------ : jhmm
jpssm : ---------HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH---HHHHHHHHHHHHH------HHHHHHHHHHHHHH-----HHHHHHH-------HHHHHHHH------------ : jpssm
Lupas 14 : ----------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : ----------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : ----------------------------------------------------------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : -------B---B-BBBBBBBB--BB--B--BB--B----B--B--BBBBB---BBBBBB-BBB-BB---B--B-B-B---BB-BBB--BB--BBB-BBB-BBB---B---B---B--BB-B-BB-B-B-B- : Jnet_25
Jnet_5 : ---------------B---BB--B---B---B-------------BB-BB----B---B--BB-BB---B-----------B--BB---B----B--BB-BB----B----------B---------B--- : Jnet_5
Jnet_0 : --------------------B----------B---------------------------------B-------------------B---------------B----------------------------- : Jnet_0
Jnet Rel : 99988100026899999999999999999987516788876517899988688874377248999999987527887468999998988203078745888774312765317888862367777777889 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.