QUERY : APGVTVTPATGLSNGQTVTVSATGLTPGTVYHVGQCAVVEPGVIGCDATTSTDVTADAAGKITAQLKVHSSFQAVVGADGTPWGTVNCKVVSCSAGLGSDSGEGAAQAITFA : QUERY
UniRef90_UPI00036010A3 : APVVSVSPASGLTDGQQVTVTATGLTPNTVFHLGHCAFVEPEKYGCDATTAKDVVSDASGKVNTTITVHSSFEAVVTSDGAVWGTVDAKKTQTQVGLGSDAGEGGGQPVTF- : UniRef90_UPI00036010A3
UniRef90_B4VDV0 : ------TPATGLSDNQQVTVTGTGLTPGTVYHVGQCAVVAPNTFGCDKTTSLDVVADAQGKVTAQLRVHVSFSAVVGASSTPWGTVDAKATPTQVGLGSDAGEGGGQLISF- : UniRef90_B4VDV0
UniRef90_P0A3R9 : --------SSGLSDGTVVKVAGAGLQAGTAYDVGQCAWVDTGVLACNPADFSSVTADANGSASTSLTVRRSFEGF-LFDGTRWGTVDCTTAACQVGLSDAAGNGEGVAISF- : UniRef90_P0A3R9
UniRef90_UPI00036DFD30 : --VITANPSTGLASSTAVGVGGRGLNPQYTYYAQQCGVIATGEWACDPNTRVRLTPDEGGAFSTPLSVRKHFEGVRG--NGEYHSIHCGRIQCVVGVATDGGDATTAPLEF- : UniRef90_UPI00036DFD30
UniRef90_UPI000368CB4C : -PQVDVEAGTNLDNDATVKVNLSGFEAGATVFIRQCAKVAEGVFNCASDDADEVTVDDEGTASADTEVHRVFEA-SDSQGAPLGEIDCAEVECYVTAGNEHG-GSAAEISFA : UniRef90_UPI000368CB4C
UniRef90_R4T2X3 : -------PSSGLSDGAVVQVTGTGLTPGATYRVGECAQDATGQFPCSPSQ-QSLVADAAGKISASVTVQKNFTGV-LPDGSSYGAVDCTAITCVVGLGDAAGNGGGVIISFS : UniRef90_R4T2X3
UniRef90_P01551 : --AFSVSPASGLSDGQSVSVSVSGAAAGETYYIAQCAPV-GGQDACNPATATSFTTDASGAASFSFVVRKSYAGST-PEGTPVGSVDCATDACNLGAGNSGLDLGHVALTF- : UniRef90_P01551
UniRef90_D6Q0E9 : -------PATGLADGATVTVSASGFATSTSATALQCAILADGRGACNVAEFHDFSL-SGGEGTTSVVVRRSFTGYVMPDGPEVGAVDCDTAPCQIVVGGNTGEYGNAAISF- : UniRef90_D6Q0E9
UniRef90_UPI00047D0E96 : ----TVTPSSGLADNAVVQVGASGLTAGTAYTVGECAEVSSGVLACNASGRVDVTAAGDGTLSTPLTVKKSFEGI-LFDGSSYGTVDCSAVTCVIGLADAAGNGAGVAISF- : UniRef90_UPI00047D0E96
UniRef90_D9VBL7 : SPSISATPSTGLTDGTVVTATVNGFTAGGTVQVSECAIPSAGLIVCDKSQVARITTDATGSASTTVTARKSFTGYTL-DGTQWGPVDCPTVPCLIGAVDQPVTHVGVPISF- : UniRef90_D9VBL7
UniRef90_D6AA95 : SPVVTVSPATGLKDGDTVTVTGTGLTPGVVYHVSQCESVTSGTYGCDPTTVIDIAADAQGKVSTQFVVRKTFQAVKGAEGIPSGTVDCTVSACAVGMGDDQGVGGGQRITF- : UniRef90_D6AA95
UniRef90_UPI00036B5B63 : TPVLTVEPSTDLTDKQAVTVKGSGFAANRALYVAQAPQGKSGESNPSPSGAQRVVTSATGTFETSVETTVTFR-------NEGVDVDCLAVPCYLASFNSP----------- : UniRef90_UPI00036B5B63
UniRef90_D2B7D4 : ---------TGLSDNTTITISATGLQPGSVYHLGQCAAVRPDAFACNAATNVDVTASATGTITKTLTVRSSFTG-SAADGSTW-PINTATTPTVIAVFNNAFDGGTTPLSF- : UniRef90_D2B7D4
UniRef90_S2XRA6 : --QLSVTPATDLSDGATVTIKGVGYPANANIYLAQTIEKPKSGYPSTYGEAAKVTVGADGSFTQEMKVATSF-----------GDVDCTSTQCYVASFTA------------ : UniRef90_S2XRA6
UniRef90_H1QCY1 : -------PGSGLSDGQSVTVTGTGFPAGTEVAVSQCRENTTCT-----DTLVTATVGADGGFSAAYTVRREFTATDWSTGTTPVTVDCATQQCQLVAYQDGTGPVGAGISF- : UniRef90_H1QCY1
UniRef90_K0K304 : APAVSATPATGLSHGDTVSVSVSGFTADSSVLLGECVAVPSGV-ACARDNGAILTIDGSGGASTSISVLRTFEAFT-SDGQSIGVVDCDTVACSLNVGQGLVETASASLSFA : UniRef90_K0K304
UniRef90_UPI00042A8D6A : -PKLELSKSDDIADGEVISITGTGYTANENIYVTQTIEKPSSGYPTTYADAVKVTADDSGSFSTELPVNTSF-----------GDVDCASTQCYIASFTA------------ : UniRef90_UPI00042A8D6A
UniRef90_D8I4I3 : ----------DLADGQVVDVSGTGYTAGSTIVLLECDAAQPAGRACDKAALVATVAGADGTLAAKLTVHQAFQAVDLSTGAAGTTVDCATAHCVIATSNTGTEGAGVSITF- : UniRef90_D8I4I3
UniRef90_L7L598 : ------TPNKELSSGDEVAVAGSGFKPKTRLAVMQTVALPRTGVPVVHSGRTLLTTDAKGRFTTAIKVRQSFAA-----------IDCAKTDCFVTA--------------- : UniRef90_L7L598
UniRef90_L7L598 : -PKLVLSPADGLQHGNEVTVTGTGFAKNSGLLVAQTLARPDNGRPQTHLEPVAVTTDQAGSFTTTVKVQ-----------PKLRDTNCLQTECFIAAYTDRVNDAWAAIAF- : UniRef90_L7L598
UniRef90_A0LR61 : -PTISITPAGPYTDGQTVHVTGSGFSPHESLVVEECANTNTGPGDCDLEGLVSITSDANGNVTADYKVKK------GPFGAN-KIVCSASQPCLLSVTQNPTEEADVPLSF- : UniRef90_A0LR61
UniRef90_UPI0003A484D0 : -ATLTAEKTTGLDAGDVVKLVGKGFTPGVRLFILPCDPAQGAGRACDMGSFSGPTADATGSFGTDVKVAAKF-----------GAVDCLKTRCAIATSNSA----------- : UniRef90_UPI0003A484D0
UniRef90_UPI00047D4AA8 : ----------GLTDGQSVAVSATGLTPNSVQNLGECTLTPANEAACVSLGST--TSAADGSANASVTVHKTFTATVG--GTVYGNVDCGVVQCFIGTGTSSGTGAGALISFA : UniRef90_UPI00047D4AA8
UniRef90_UPI00034878A3 : -PRVTVTPSTALDEGDVVTVEGTGFRPGAGIYVALTGVPRSGVWLRDAA-----APAEDGTFSTELDVVGAF----DKDGTSY---DCAEEQCYVAVFND------------ : UniRef90_UPI00034878A3
UniRef90_C4LJ19 : APTLTLDKDKDISGGDTLKATGKGYKPGESIYVTQTIEKPASGYPKTYGKAVKVKADDQGNFTTDLTVDTKFR-----------DVDCTTTQCYVASFTA------------ : UniRef90_C4LJ19
UniRef90_A0LR57 : --SITVSPSTGLASGQTVKVTGTGFSPNEPLVVTECAAASTSQADCNLNGVVSTTSNANGAVSASITVTK------GPFGQNNVTCS-ATQPCMITVAQNPTESAFALISFA : UniRef90_A0LR57
UniRef90_D9V8Y5 : --TLSVSPSTGLAAEQTVTVNAWGLAANQQILLLEC---PTEDGSCYVLGY--PTADANGAISTTVTVYR------------------------------------------ : UniRef90_D9V8Y5
UniRef90_D7AVF6 : -PRVTVAPASDLDAGDTVTVEGTGFRPGQGVYAALTAVPQSADYPAHHTGAVWLAPGEDGSFSAELRVTGSYE----TDGTVH---DCARTQCYVAVFNDHTDIAN------ : UniRef90_D7AVF6
UniRef90_UPI0003A095EE : APTISLSKATGIAGGEEITVTGKNFKPGKGVYIAQTVAKPAGGVPTQYGNAGYVQVGPDGTFSVKIKPAQSFEGKDKKK------VDCAATACFVATFNDHTDIAN------ : UniRef90_UPI0003A095EE
UniRef90_UPI00034B0A6B : -PQVQVSQTTELDEGQVVQVDGTGFRPGAGIYVALTGIAQSDSYGSGVWLRDGSAPAADGTFSTGLDVVGAFE-------KSGNAYDCVEDQCYVAVFNDRHDLANTPISFA : UniRef90_UPI00034B0A6B
UniRef90_M3TG50 : -------PTTGLRSGATVTVSGKGYRSGENVYVTQTIAKPSSGYPSTYADAKKVTVGSTGTFSTQIAVTSTF-----------GKVNCLRTACFVASFTDRSQDAWVPISFS : UniRef90_M3TG50
UniRef90_N0CH85 : -PTLTVSQVTGLGAETEVTVVGSGYQPGRGVYLAQSIALPGTTYPSVYGNAAWVQVGADGTFTVTAKLTQTFT-------SGGTTVDCRTTACFVTTFNSH----------- : UniRef90_N0CH85
UniRef90_UPI00029A800B : -PTLTVSQVTGLGTETQVTVSGKGYQPGRGVYLAQSIAMPGTTYPSVFGNAVYVQVGADGTFSVTAKLTETFT----PSGAP--AVDCRTTACFVTSFNSH----------- : UniRef90_UPI00029A800B
UniRef90_UPI000348342A : -PEVRVGQTTGLDEGQTVRVDGTGFRPGSGVYVALTGIAQSDSFGSGVWLREGTAPDADGAFGTDLDVIGAFE----KGGTAY---DCLEDQCYVAVFND------------ : UniRef90_UPI000348342A
UniRef90_UPI000464BE7C : -----VSQDSGLDNGQAVTVTGTGLDPEVGYYLSTCVIGTEGPTGPDCAGGPGIVGASDGTFTTDLNVTQTGETMNK------VAIDCDETPCAVTLFGDHRNGAGTPVTF- : UniRef90_UPI000464BE7C
UniRef90_UPI0003B4EDF0 : -PKLTLSAATALQPGQAVTVSGRGFKPGKGVYVAQTVAHPASGVPSNYANAQYVAVGADGTFSTTVTLTATYTPARATEVT-----DCLAVSCYIASFNDHTDLANSPITFA : UniRef90_UPI0003B4EDF0
UniRef90_UPI00029A2C58 : --QLTLSESTELTDGQEITVEGSGVDPELGYYLSTCVAGTSGPTGPDCAGGPSVPVNPDGTFTATLHVTRAGETMTGE------PVDCDETPCAVTLFGDHRNGAEVPVTF- : UniRef90_UPI00029A2C58
UniRef90_E6KTU5 : TPAVTVEPST-VEAGKTVTVKGTGFAPESSVTL---------TLHSEPVEVGTATADENGAFSAEVTVPATTEA-------------------------------------- : UniRef90_E6KTU5
UniRef90_UPI000374C359 : -AVLHVSATTDLADGQRVTVSGSGFQPGPAVAVGLCRQGYTNGLNCDLGGGAGFVNIADGTFKTTLTLHPRFK-----------EIDCLKQQCEVAAA-------------- : UniRef90_UPI000374C359
UniRef90_UPI000382A0D4 : -PTLTADRVGALDTEDRIAVIGRGFRPGSEVRLKTCDPAQGPDKACDSEGVAPVRVDTDGTFSRQLRVRAAF-----------GPVDCLRTRCAVATTKVGGGG-------- : UniRef90_UPI000382A0D4
UniRef90_B4UY62 : APTVRVDPSEELVDGQSVHVTGRGYEPQYHPVVLECVAGSTEATGCRSRSRPPATTD-KGWLDETVELSETFTTGDGR------AVDCRVAPCEVVV--------------- : UniRef90_B4UY62
UniRef90_I0HD66 : -ATLKVSKTTGLKSGDSVTVSGTGFTKNTDLALGQCVKNPKGPSDCNLAGGAVFATDGSGKTDTTLKLATSFSG-------------------------------------- : UniRef90_I0HD66
UniRef90_B1VIP2 : --KITADPAENLADGQKISVKVTGLDPEAGYYGAICAAESTPGKPMAAGTQQWITQKDGGTAPLSPAGETEFTLTAKQKGQ---AVDCATQECVLKIFGDHTEGAEVPVTFA : UniRef90_B1VIP2
UniRef90_G7GSI9 : --------------GETITVTGSGFTADQRLTIAQTLARPVTGFPIVTARARTLTTDGSGTFTTTLTVDRRVAGT-----------DCTAAVCYIATF-------------- : UniRef90_G7GSI9
UniRef90_A7B9Y3 : TPTVTVDPST-VEAGKTITVKGTGFAPESAVTL---------TLHSEPVEVGTATADENGAFSAEVTV---------PANTEAGD------HTVVAESTSPAVTASAPLT-- : UniRef90_A7B9Y3
UniRef90_C4LJ15 : --VMKVSQAKDLRDGQQVTVDVKDADPDMGYYLALCAKEQTGDVPCISNENEDGAIPDDGSFSEEITVNQK----NVSTGGE--EIDCKTQECVIKLFGDHSNGADIPVTF- : UniRef90_C4LJ15
UniRef90_S2XEK1 : --TMEAEPVNDLSEGDVISVDLSGLDPDYGYYAALCAAVPDCTGDRSAGTQSQITKKSGGTTTIADDNTAHFELSVVPTGE---AVDCTQQDCVLKLFGDHSEGTEIPVTFA : UniRef90_S2XEK1
UniRef90_UPI00039B9731 : APVLELSEPSLKADAGRVTVTGAGFAAGSTVRIVQCATTPDGGVNCLYDDGRRVIADRAGTLVTRLRVEREIKLVGG------GVADCAEQACVVA--NAWTDGGRIAL--- : UniRef90_UPI00039B9731
UniRef90_UPI0003702B11 : --SLTVDPATGLDDGDTVKVTGSGYDPKLGIYVALCVDNGPGVTPAPCLGGGGPGTDADGGGSVWISSNPPAYGVDGPDGTFEVDVDCLEVRCAVVTKADHT---------- : UniRef90_UPI0003702B11
UniRef90_F6END3 : -PRVDVSPGTALRSGDVVTVAGSGFDPDAGYYVSTCIAGSAGGGSPQQGTFMWVTNNPEAPGTAPLSDAGTFETDLTVETTGNG-VDCREDECAVTVYYDYVNGFGT----- : UniRef90_F6END3
UniRef90_G0HC07 : -PQITADKTQDLADGDTITVTVRGLDVEGGYYVGICGGAPDCTGDRTAEGSDRGTVDADGDAEVELTV-----------SEQGDAVDCSTDKCVLKIFGDHTNGGEAPVSFA : UniRef90_G0HC07
UniRef90_D1ADH2 : --TLTVSKAAGLSDGEKITVTGRGYDPNKGIYVAFCKDNGPDKAPSPCGGGADTSGSTGGSVGKSLVVGGSFEVTINVSPKISDEVDCTKTKCVVATRADHTRSG------- : UniRef90_D1ADH2
UniRef90_S3AEE1 : -PSVDAAGARYFIDGDTTTTTVTGLAANTDYYVGLCANASYLFGIPACAGFQSVATDAAGSLTATVVLQSNGANTHAKAPGQPASVDCATDACAIKVATHGSN--------- : UniRef90_S3AEE1
UniRef90_U3GWS3 : -----VDAQTEYNDGDTITVVTDGLKPNTKYLLGQCTADAYDIPACAADTKVSATTDNKGHLEADIRVVQ------------------------------------------ : UniRef90_U3GWS3
UniRef90_UPI0002485C35 : TPQITADRTVDLTDGDTVKVTVRNLDTSAGYYLAICGVPPDCTGDRESATWITPETDSDGTAEASLTVKTTGEA-----------VNCATDKCVLKVFNSSRNVGEAPVSFA : UniRef90_UPI0002485C35
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------11 :
OrigSeq : APGVTVTPATGLSNGQTVTVSATGLTPGTVYHVGQCAVVEPGVIGCDATTSTDVTADAAGKITAQLKVHSSFQAVVGADGTPWGTVNCKVVSCSAGLGSDSGEGAAQAITFA : OrigSeq
Jnet : --EEEEE---------EEEEEEE------EEEEEEE----------------EEEE----EEEEEEEEEEEEEEEE--------EE---EEEEEEEEE-------EEEEE-- : Jnet
jhmm : --EEEE----------EEEEEEE------EEEEEEE----------------EEEE-----EEEEEEE-EEEEEEE--------EEE--EEEEEEEEE-------EEEEE-- : jhmm
jpssm : --EEEEE---------EEEEEEEE-----EEEEEE----------------EEEEE----EEEEEEEEEEEEEEEE-------E-----EEEEEEEEE-------EEEEEE- : jpssm
Lupas 14 : ---------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : ---------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : ---------------------------------------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : ---B-B-----B-----B-B-B--B---B-BBBBBBB------BBBBB--B--BBB---B-B-B-B-B---B-BBBB------B-B-B--B-BBBBBB-B-B--BBBBB-B- : Jnet_25
Jnet_5 : ---B-------------B-B-B--------B-B----------------------------------B-----------------B-B----BBBBBB----------B--- : Jnet_5
Jnet_0 : --------------------------------B-----------------------------------------------------------B-BB---------------- : Jnet_0
Jnet Rel : 9848881377777774478898716888268887416777766667777751687158850899988848899986377776312207527898887616888614788737 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.