SILENT_MODE
BLOCK_FILE jp_un0Px9h.concise.blc
MAX_NSEQ 350
MAX_INPUT_LEN 352
OUTPUT_FILE jp_un0Px9h.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 111 339   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 340 111 349 H SPACE
SUB_CHARS 1 340 111 349 E SPACE
SUB_CHARS 1 340 111 349 - SPACE
STRAND 28 343 35
COLOUR_TEXT_REGION 28 343 35 343 51
STRAND 40 343 48
COLOUR_TEXT_REGION 40 343 48 343 51
STRAND 52 343 64
COLOUR_TEXT_REGION 52 343 64 343 51
STRAND 67 343 72
COLOUR_TEXT_REGION 67 343 72 343 51
STRAND 94 343 95
COLOUR_TEXT_REGION 94 343 95 343 51
HELIX 5 343 19
COLOUR_TEXT_REGION 5 343 19 343 50
HELIX 77 343 85
COLOUR_TEXT_REGION 77 343 85 343 50
STRAND 28 348 35
COLOUR_TEXT_REGION 28 348 35 348 51
STRAND 41 348 48
COLOUR_TEXT_REGION 41 348 48 348 51
STRAND 52 348 64
COLOUR_TEXT_REGION 52 348 64 348 51
STRAND 67 348 72
COLOUR_TEXT_REGION 67 348 72 348 51
STRAND 94 348 97
COLOUR_TEXT_REGION 94 348 97 348 51
HELIX 5 348 19
COLOUR_TEXT_REGION 5 348 19 348 50
HELIX 77 348 85
COLOUR_TEXT_REGION 77 348 85 348 50
STRAND 29 349 35
COLOUR_TEXT_REGION 29 349 35 349 51
STRAND 40 349 48
COLOUR_TEXT_REGION 40 349 48 349 51
STRAND 52 349 63
COLOUR_TEXT_REGION 52 349 63 349 51
STRAND 67 349 72
COLOUR_TEXT_REGION 67 349 72 349 51
STRAND 93 349 95
COLOUR_TEXT_REGION 93 349 95 349 51
HELIX 4 349 18
COLOUR_TEXT_REGION 4 349 18 349 50
HELIX 78 349 85
COLOUR_TEXT_REGION 78 349 85 349 50