SILENT_MODE
BLOCK_FILE jp_NCfl4Ud.concise.blc
MAX_NSEQ 119
MAX_INPUT_LEN 121
OUTPUT_FILE jp_NCfl4Ud.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 100 108   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 109 100 118 H SPACE
SUB_CHARS 1 109 100 118 E SPACE
SUB_CHARS 1 109 100 118 - SPACE
STRAND 3 112 8
COLOUR_TEXT_REGION 3 112 8 112 51
STRAND 17 112 19
COLOUR_TEXT_REGION 17 112 19 112 51
STRAND 66 112 70
COLOUR_TEXT_REGION 66 112 70 112 51
HELIX 24 112 42
COLOUR_TEXT_REGION 24 112 42 112 50
HELIX 53 112 61
COLOUR_TEXT_REGION 53 112 61 112 50
HELIX 83 112 98
COLOUR_TEXT_REGION 83 112 98 112 50
STRAND 3 117 7
COLOUR_TEXT_REGION 3 117 7 117 51
STRAND 17 117 19
COLOUR_TEXT_REGION 17 117 19 117 51
STRAND 50 117 52
COLOUR_TEXT_REGION 50 117 52 117 51
STRAND 66 117 70
COLOUR_TEXT_REGION 66 117 70 117 51
HELIX 24 117 42
COLOUR_TEXT_REGION 24 117 42 117 50
HELIX 53 117 61
COLOUR_TEXT_REGION 53 117 61 117 50
HELIX 83 117 98
COLOUR_TEXT_REGION 83 117 98 117 50
STRAND 3 118 9
COLOUR_TEXT_REGION 3 118 9 118 51
STRAND 17 118 18
COLOUR_TEXT_REGION 17 118 18 118 51
STRAND 66 118 70
COLOUR_TEXT_REGION 66 118 70 118 51
STRAND 78 118 79
COLOUR_TEXT_REGION 78 118 79 118 51
HELIX 24 118 41
COLOUR_TEXT_REGION 24 118 41 118 50
HELIX 53 118 61
COLOUR_TEXT_REGION 53 118 61 118 50
HELIX 84 118 98
COLOUR_TEXT_REGION 84 118 98 118 50