SILENT_MODE BLOCK_FILE jp_s9eIjwe.concise.blc MAX_NSEQ 241 MAX_INPUT_LEN 243 OUTPUT_FILE jp_s9eIjwe.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 201 230 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 231 201 240 H SPACE SUB_CHARS 1 231 201 240 E SPACE SUB_CHARS 1 231 201 240 - SPACE STRAND 116 234 122 COLOUR_TEXT_REGION 116 234 122 234 51 STRAND 129 234 134 COLOUR_TEXT_REGION 129 234 134 234 51 STRAND 137 234 141 COLOUR_TEXT_REGION 137 234 141 234 51 STRAND 146 234 153 COLOUR_TEXT_REGION 146 234 153 234 51 STRAND 157 234 162 COLOUR_TEXT_REGION 157 234 162 234 51 STRAND 166 234 172 COLOUR_TEXT_REGION 166 234 172 234 51 STRAND 184 234 189 COLOUR_TEXT_REGION 184 234 189 234 51 STRAND 193 234 195 COLOUR_TEXT_REGION 193 234 195 234 51 HELIX 3 234 21 COLOUR_TEXT_REGION 3 234 21 234 50 HELIX 27 234 50 COLOUR_TEXT_REGION 27 234 50 234 50 HELIX 63 234 84 COLOUR_TEXT_REGION 63 234 84 234 50 HELIX 95 234 103 COLOUR_TEXT_REGION 95 234 103 234 50 HELIX 173 234 179 COLOUR_TEXT_REGION 173 234 179 234 50 STRAND 117 239 122 COLOUR_TEXT_REGION 117 239 122 239 51 STRAND 129 239 134 COLOUR_TEXT_REGION 129 239 134 239 51 STRAND 137 239 141 COLOUR_TEXT_REGION 137 239 141 239 51 STRAND 146 239 153 COLOUR_TEXT_REGION 146 239 153 239 51 STRAND 158 239 162 COLOUR_TEXT_REGION 158 239 162 239 51 STRAND 166 239 172 COLOUR_TEXT_REGION 166 239 172 239 51 STRAND 184 239 189 COLOUR_TEXT_REGION 184 239 189 239 51 STRAND 193 239 195 COLOUR_TEXT_REGION 193 239 195 239 51 HELIX 3 239 21 COLOUR_TEXT_REGION 3 239 21 239 50 HELIX 27 239 50 COLOUR_TEXT_REGION 27 239 50 239 50 HELIX 53 239 53 COLOUR_TEXT_REGION 53 239 53 239 50 HELIX 63 239 84 COLOUR_TEXT_REGION 63 239 84 239 50 HELIX 95 239 103 COLOUR_TEXT_REGION 95 239 103 239 50 HELIX 173 239 179 COLOUR_TEXT_REGION 173 239 179 239 50 STRAND 110 240 112 COLOUR_TEXT_REGION 110 240 112 240 51 STRAND 116 240 122 COLOUR_TEXT_REGION 116 240 122 240 51 STRAND 129 240 135 COLOUR_TEXT_REGION 129 240 135 240 51 STRAND 137 240 141 COLOUR_TEXT_REGION 137 240 141 240 51 STRAND 147 240 153 COLOUR_TEXT_REGION 147 240 153 240 51 STRAND 156 240 162 COLOUR_TEXT_REGION 156 240 162 240 51 STRAND 166 240 173 COLOUR_TEXT_REGION 166 240 173 240 51 STRAND 184 240 189 COLOUR_TEXT_REGION 184 240 189 240 51 STRAND 193 240 195 COLOUR_TEXT_REGION 193 240 195 240 51 HELIX 2 240 21 COLOUR_TEXT_REGION 2 240 21 240 50 HELIX 27 240 49 COLOUR_TEXT_REGION 27 240 49 240 50 HELIX 62 240 84 COLOUR_TEXT_REGION 62 240 84 240 50 HELIX 97 240 104 COLOUR_TEXT_REGION 97 240 104 240 50 HELIX 174 240 179 COLOUR_TEXT_REGION 174 240 179 240 50