QUERY           : MMTKKERIAIQRSMAEEALGKLKAIRQLCGAEDSDMQEVEIWTNRIKELEDWLWGESPIA : QUERY 
UniRef90_Q8EDS4 : MMTKKERIAIQRSMAEEALGKLKAIRQLCGAEDSDMQEVEIWTNRIKELEDWLWGESPIA : UniRef90_Q8EDS4

                : 1---------11--------21--------31--------41--------51-------- :
OrigSeq         : MMTKKERIAIQRSMAEEALGKLKAIRQLCGAEDSDMQEVEIWTNRIKELEDWLWGESPIA : OrigSeq

Jnet            : -----HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH------- : Jnet
jhmm            : -----HHHHHHHHHHHHHHHHHHHHHHH---------EEEH-HHHHHHHHHHH------- : jhmm
jpssm           : ----HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH------ : jpssm

Lupas 14        : ------------------------------------------------------------ : Lupas 14
Lupas 21        : ------------------------------------------------------------ : Lupas 21
Lupas 28        : ------------------------------------------------------------ : Lupas 28

Jnet_25         : -------B-B---BB--BB--B-BB--BB------B--B-BBB--B--B--BBB----B- : Jnet_25
Jnet_5          : ---------------------B--B--------------------B--B----------- : Jnet_5
Jnet_0          : ------------------------B----------------------------------- : Jnet_0
Jnet Rel        : 996127899999999999999999998604788776222383999998754541478999 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.