SILENT_MODE BLOCK_FILE jp__DuosYr.concise.blc MAX_NSEQ 201 MAX_INPUT_LEN 203 OUTPUT_FILE jp__DuosYr.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 206 190 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 191 206 200 H SPACE SUB_CHARS 1 191 206 200 E SPACE SUB_CHARS 1 191 206 200 - SPACE STRAND 9 194 14 COLOUR_TEXT_REGION 9 194 14 194 51 STRAND 20 194 27 COLOUR_TEXT_REGION 20 194 27 194 51 STRAND 35 194 40 COLOUR_TEXT_REGION 35 194 40 194 51 STRAND 43 194 47 COLOUR_TEXT_REGION 43 194 47 194 51 STRAND 61 194 68 COLOUR_TEXT_REGION 61 194 68 194 51 STRAND 72 194 76 COLOUR_TEXT_REGION 72 194 76 194 51 STRAND 116 194 121 COLOUR_TEXT_REGION 116 194 121 194 51 STRAND 127 194 132 COLOUR_TEXT_REGION 127 194 132 194 51 STRAND 146 194 153 COLOUR_TEXT_REGION 146 194 153 194 51 STRAND 159 194 163 COLOUR_TEXT_REGION 159 194 163 194 51 STRAND 188 194 194 COLOUR_TEXT_REGION 188 194 194 194 51 STRAND 199 194 204 COLOUR_TEXT_REGION 199 194 204 194 51 HELIX 81 194 89 COLOUR_TEXT_REGION 81 194 89 194 50 HELIX 94 194 104 COLOUR_TEXT_REGION 94 194 104 194 50 HELIX 133 194 136 COLOUR_TEXT_REGION 133 194 136 194 50 STRAND 9 199 14 COLOUR_TEXT_REGION 9 199 14 199 51 STRAND 20 199 27 COLOUR_TEXT_REGION 20 199 27 199 51 STRAND 35 199 40 COLOUR_TEXT_REGION 35 199 40 199 51 STRAND 43 199 47 COLOUR_TEXT_REGION 43 199 47 199 51 STRAND 61 199 68 COLOUR_TEXT_REGION 61 199 68 199 51 STRAND 72 199 76 COLOUR_TEXT_REGION 72 199 76 199 51 STRAND 116 199 121 COLOUR_TEXT_REGION 116 199 121 199 51 STRAND 128 199 128 COLOUR_TEXT_REGION 128 199 128 199 51 STRAND 130 199 130 COLOUR_TEXT_REGION 130 199 130 199 51 STRAND 146 199 153 COLOUR_TEXT_REGION 146 199 153 199 51 STRAND 159 199 163 COLOUR_TEXT_REGION 159 199 163 199 51 STRAND 189 199 193 COLOUR_TEXT_REGION 189 199 193 199 51 STRAND 199 199 204 COLOUR_TEXT_REGION 199 199 204 199 51 HELIX 81 199 89 COLOUR_TEXT_REGION 81 199 89 199 50 HELIX 94 199 104 COLOUR_TEXT_REGION 94 199 104 199 50 HELIX 131 199 137 COLOUR_TEXT_REGION 131 199 137 199 50 STRAND 9 200 15 COLOUR_TEXT_REGION 9 200 15 200 51 STRAND 20 200 27 COLOUR_TEXT_REGION 20 200 27 200 51 STRAND 35 200 40 COLOUR_TEXT_REGION 35 200 40 200 51 STRAND 43 200 47 COLOUR_TEXT_REGION 43 200 47 200 51 STRAND 61 200 67 COLOUR_TEXT_REGION 61 200 67 200 51 STRAND 72 200 76 COLOUR_TEXT_REGION 72 200 76 200 51 STRAND 116 200 122 COLOUR_TEXT_REGION 116 200 122 200 51 STRAND 127 200 133 COLOUR_TEXT_REGION 127 200 133 200 51 STRAND 146 200 152 COLOUR_TEXT_REGION 146 200 152 200 51 STRAND 160 200 162 COLOUR_TEXT_REGION 160 200 162 200 51 STRAND 188 200 194 COLOUR_TEXT_REGION 188 200 194 200 51 STRAND 199 200 204 COLOUR_TEXT_REGION 199 200 204 200 51 HELIX 82 200 89 COLOUR_TEXT_REGION 82 200 89 200 50 HELIX 94 200 104 COLOUR_TEXT_REGION 94 200 104 200 50 HELIX 167 200 173 COLOUR_TEXT_REGION 167 200 173 200 50