SILENT_MODE BLOCK_FILE jp_LUVTm_U.concise.blc MAX_NSEQ 901 MAX_INPUT_LEN 903 OUTPUT_FILE jp_LUVTm_U.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 148 890 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 891 148 900 H SPACE SUB_CHARS 1 891 148 900 E SPACE SUB_CHARS 1 891 148 900 - SPACE HELIX 2 894 9 COLOUR_TEXT_REGION 2 894 9 894 50 HELIX 16 894 24 COLOUR_TEXT_REGION 16 894 24 894 50 HELIX 35 894 56 COLOUR_TEXT_REGION 35 894 56 894 50 HELIX 63 894 73 COLOUR_TEXT_REGION 63 894 73 894 50 HELIX 75 894 84 COLOUR_TEXT_REGION 75 894 84 894 50 HELIX 91 894 94 COLOUR_TEXT_REGION 91 894 94 894 50 HELIX 101 894 116 COLOUR_TEXT_REGION 101 894 116 894 50 HELIX 122 894 140 COLOUR_TEXT_REGION 122 894 140 894 50 HELIX 2 899 9 COLOUR_TEXT_REGION 2 899 9 899 50 HELIX 16 899 24 COLOUR_TEXT_REGION 16 899 24 899 50 HELIX 35 899 56 COLOUR_TEXT_REGION 35 899 56 899 50 HELIX 64 899 73 COLOUR_TEXT_REGION 64 899 73 899 50 HELIX 75 899 84 COLOUR_TEXT_REGION 75 899 84 899 50 HELIX 103 899 116 COLOUR_TEXT_REGION 103 899 116 899 50 HELIX 122 899 139 COLOUR_TEXT_REGION 122 899 139 899 50 HELIX 2 900 8 COLOUR_TEXT_REGION 2 900 8 900 50 HELIX 16 900 23 COLOUR_TEXT_REGION 16 900 23 900 50 HELIX 34 900 56 COLOUR_TEXT_REGION 34 900 56 900 50 HELIX 62 900 74 COLOUR_TEXT_REGION 62 900 74 900 50 HELIX 77 900 84 COLOUR_TEXT_REGION 77 900 84 900 50 HELIX 90 900 96 COLOUR_TEXT_REGION 90 900 96 900 50 HELIX 100 900 116 COLOUR_TEXT_REGION 100 900 116 900 50 HELIX 122 900 140 COLOUR_TEXT_REGION 122 900 140 900 50