SILENT_MODE
BLOCK_FILE jp_57LJLwX.concise.blc
MAX_NSEQ 745
MAX_INPUT_LEN 747
OUTPUT_FILE jp_57LJLwX.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 68 734   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 735 68 744 H SPACE
SUB_CHARS 1 735 68 744 E SPACE
SUB_CHARS 1 735 68 744 - SPACE
STRAND 19 738 26
COLOUR_TEXT_REGION 19 738 26 738 51
STRAND 33 738 40
COLOUR_TEXT_REGION 33 738 40 738 51
STRAND 43 738 49
COLOUR_TEXT_REGION 43 738 49 738 51
HELIX 2 738 13
COLOUR_TEXT_REGION 2 738 13 738 50
HELIX 52 738 66
COLOUR_TEXT_REGION 52 738 66 738 50
STRAND 19 743 26
COLOUR_TEXT_REGION 19 743 26 743 51
STRAND 33 743 40
COLOUR_TEXT_REGION 33 743 40 743 51
STRAND 43 743 49
COLOUR_TEXT_REGION 43 743 49 743 51
HELIX 2 743 13
COLOUR_TEXT_REGION 2 743 13 743 50
HELIX 52 743 66
COLOUR_TEXT_REGION 52 743 66 743 50
STRAND 19 744 26
COLOUR_TEXT_REGION 19 744 26 744 51
STRAND 32 744 40
COLOUR_TEXT_REGION 32 744 40 744 51
STRAND 43 744 49
COLOUR_TEXT_REGION 43 744 49 744 51
HELIX 3 744 13
COLOUR_TEXT_REGION 3 744 13 744 50
HELIX 52 744 66
COLOUR_TEXT_REGION 52 744 66 744 50