SILENT_MODE BLOCK_FILE jp_AHgqldp.concise.blc MAX_NSEQ 312 MAX_INPUT_LEN 314 OUTPUT_FILE jp_AHgqldp.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 149 301 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 302 149 311 H SPACE SUB_CHARS 1 302 149 311 E SPACE SUB_CHARS 1 302 149 311 - SPACE STRAND 7 305 10 COLOUR_TEXT_REGION 7 305 10 305 51 STRAND 111 305 114 COLOUR_TEXT_REGION 111 305 114 305 51 STRAND 142 305 147 COLOUR_TEXT_REGION 142 305 147 305 51 HELIX 17 305 32 COLOUR_TEXT_REGION 17 305 32 305 50 HELIX 40 305 59 COLOUR_TEXT_REGION 40 305 59 305 50 HELIX 63 305 73 COLOUR_TEXT_REGION 63 305 73 305 50 HELIX 80 305 90 COLOUR_TEXT_REGION 80 305 90 305 50 HELIX 100 305 107 COLOUR_TEXT_REGION 100 305 107 305 50 HELIX 117 305 129 COLOUR_TEXT_REGION 117 305 129 305 50 HELIX 133 305 141 COLOUR_TEXT_REGION 133 305 141 305 50 STRAND 8 310 9 COLOUR_TEXT_REGION 8 310 9 310 51 STRAND 111 310 114 COLOUR_TEXT_REGION 111 310 114 310 51 STRAND 142 310 147 COLOUR_TEXT_REGION 142 310 147 310 51 HELIX 17 310 32 COLOUR_TEXT_REGION 17 310 32 310 50 HELIX 35 310 42 COLOUR_TEXT_REGION 35 310 42 310 50 HELIX 44 310 44 COLOUR_TEXT_REGION 44 310 44 310 50 HELIX 47 310 59 COLOUR_TEXT_REGION 47 310 59 310 50 HELIX 63 310 72 COLOUR_TEXT_REGION 63 310 72 310 50 HELIX 81 310 90 COLOUR_TEXT_REGION 81 310 90 310 50 HELIX 94 310 95 COLOUR_TEXT_REGION 94 310 95 310 50 HELIX 101 310 107 COLOUR_TEXT_REGION 101 310 107 310 50 HELIX 117 310 129 COLOUR_TEXT_REGION 117 310 129 310 50 HELIX 133 310 141 COLOUR_TEXT_REGION 133 310 141 310 50 STRAND 6 311 12 COLOUR_TEXT_REGION 6 311 12 311 51 STRAND 111 311 115 COLOUR_TEXT_REGION 111 311 115 311 51 STRAND 143 311 147 COLOUR_TEXT_REGION 143 311 147 311 51 HELIX 18 311 32 COLOUR_TEXT_REGION 18 311 32 311 50 HELIX 40 311 59 COLOUR_TEXT_REGION 40 311 59 311 50 HELIX 63 311 73 COLOUR_TEXT_REGION 63 311 73 311 50 HELIX 75 311 76 COLOUR_TEXT_REGION 75 311 76 311 50 HELIX 78 311 89 COLOUR_TEXT_REGION 78 311 89 311 50 HELIX 99 311 107 COLOUR_TEXT_REGION 99 311 107 311 50 HELIX 118 311 129 COLOUR_TEXT_REGION 118 311 129 311 50 HELIX 133 311 142 COLOUR_TEXT_REGION 133 311 142 311 50