SILENT_MODE BLOCK_FILE jp_22cfDh7.concise.blc MAX_NSEQ 175 MAX_INPUT_LEN 177 OUTPUT_FILE jp_22cfDh7.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 135 164 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 165 135 174 H SPACE SUB_CHARS 1 165 135 174 E SPACE SUB_CHARS 1 165 135 174 - SPACE STRAND 21 168 21 COLOUR_TEXT_REGION 21 168 21 168 51 STRAND 29 168 34 COLOUR_TEXT_REGION 29 168 34 168 51 STRAND 58 168 63 COLOUR_TEXT_REGION 58 168 63 168 51 STRAND 103 168 107 COLOUR_TEXT_REGION 103 168 107 168 51 STRAND 111 168 120 COLOUR_TEXT_REGION 111 168 120 168 51 STRAND 125 168 133 COLOUR_TEXT_REGION 125 168 133 168 51 HELIX 7 168 17 COLOUR_TEXT_REGION 7 168 17 168 50 HELIX 43 168 50 COLOUR_TEXT_REGION 43 168 50 168 50 HELIX 64 168 67 COLOUR_TEXT_REGION 64 168 67 168 50 HELIX 81 168 98 COLOUR_TEXT_REGION 81 168 98 168 50 STRAND 20 173 22 COLOUR_TEXT_REGION 20 173 22 173 51 STRAND 29 173 34 COLOUR_TEXT_REGION 29 173 34 173 51 STRAND 58 173 63 COLOUR_TEXT_REGION 58 173 63 173 51 STRAND 103 173 107 COLOUR_TEXT_REGION 103 173 107 173 51 STRAND 110 173 120 COLOUR_TEXT_REGION 110 173 120 173 51 STRAND 125 173 133 COLOUR_TEXT_REGION 125 173 133 173 51 HELIX 7 173 16 COLOUR_TEXT_REGION 7 173 16 173 50 HELIX 43 173 50 COLOUR_TEXT_REGION 43 173 50 173 50 HELIX 64 173 66 COLOUR_TEXT_REGION 64 173 66 173 50 HELIX 82 173 98 COLOUR_TEXT_REGION 82 173 98 173 50 STRAND 29 174 34 COLOUR_TEXT_REGION 29 174 34 174 51 STRAND 58 174 62 COLOUR_TEXT_REGION 58 174 62 174 51 STRAND 102 174 107 COLOUR_TEXT_REGION 102 174 107 174 51 STRAND 111 174 119 COLOUR_TEXT_REGION 111 174 119 174 51 STRAND 125 174 133 COLOUR_TEXT_REGION 125 174 133 174 51 HELIX 6 174 18 COLOUR_TEXT_REGION 6 174 18 174 50 HELIX 43 174 50 COLOUR_TEXT_REGION 43 174 50 174 50 HELIX 64 174 69 COLOUR_TEXT_REGION 64 174 69 174 50 HELIX 80 174 98 COLOUR_TEXT_REGION 80 174 98 174 50