SILENT_MODE
BLOCK_FILE jp_ryuTm4K.concise.blc
MAX_NSEQ 173
MAX_INPUT_LEN 175
OUTPUT_FILE jp_ryuTm4K.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 82 162   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 163 82 172 H SPACE
SUB_CHARS 1 163 82 172 E SPACE
SUB_CHARS 1 163 82 172 - SPACE
STRAND 60 166 63
COLOUR_TEXT_REGION 60 166 63 166 51
HELIX 3 166 11
COLOUR_TEXT_REGION 3 166 11 166 50
HELIX 16 166 28
COLOUR_TEXT_REGION 16 166 28 166 50
HELIX 37 166 54
COLOUR_TEXT_REGION 37 166 54 166 50
HELIX 67 166 77
COLOUR_TEXT_REGION 67 166 77 166 50
STRAND 59 171 63
COLOUR_TEXT_REGION 59 171 63 171 51
HELIX 3 171 11
COLOUR_TEXT_REGION 3 171 11 171 50
HELIX 16 171 29
COLOUR_TEXT_REGION 16 171 29 171 50
HELIX 35 171 54
COLOUR_TEXT_REGION 35 171 54 171 50
HELIX 67 171 77
COLOUR_TEXT_REGION 67 171 77 171 50
STRAND 60 172 63
COLOUR_TEXT_REGION 60 172 63 172 51
HELIX 3 172 11
COLOUR_TEXT_REGION 3 172 11 172 50
HELIX 16 172 25
COLOUR_TEXT_REGION 16 172 25 172 50
HELIX 37 172 53
COLOUR_TEXT_REGION 37 172 53 172 50
HELIX 67 172 76
COLOUR_TEXT_REGION 67 172 76 172 50