SILENT_MODE
BLOCK_FILE jp_RcO7e7a.concise.blc
MAX_NSEQ 124
MAX_INPUT_LEN 126
OUTPUT_FILE jp_RcO7e7a.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 125 113   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 114 125 123 H SPACE
SUB_CHARS 1 114 125 123 E SPACE
SUB_CHARS 1 114 125 123 - SPACE
STRAND 103 117 108
COLOUR_TEXT_REGION 103 117 108 117 51
STRAND 112 117 116
COLOUR_TEXT_REGION 112 117 116 117 51
HELIX 6 117 26
COLOUR_TEXT_REGION 6 117 26 117 50
HELIX 34 117 37
COLOUR_TEXT_REGION 34 117 37 117 50
HELIX 45 117 61
COLOUR_TEXT_REGION 45 117 61 117 50
HELIX 78 117 87
COLOUR_TEXT_REGION 78 117 87 117 50
STRAND 103 122 108
COLOUR_TEXT_REGION 103 122 108 122 51
STRAND 113 122 116
COLOUR_TEXT_REGION 113 122 116 122 51
HELIX 2 122 4
COLOUR_TEXT_REGION 2 122 4 122 50
HELIX 6 122 26
COLOUR_TEXT_REGION 6 122 26 122 50
HELIX 34 122 36
COLOUR_TEXT_REGION 34 122 36 122 50
HELIX 46 122 61
COLOUR_TEXT_REGION 46 122 61 122 50
HELIX 78 122 87
COLOUR_TEXT_REGION 78 122 87 122 50
STRAND 66 123 67
COLOUR_TEXT_REGION 66 123 67 123 51
STRAND 72 123 74
COLOUR_TEXT_REGION 72 123 74 123 51
STRAND 103 123 107
COLOUR_TEXT_REGION 103 123 107 123 51
STRAND 112 123 117
COLOUR_TEXT_REGION 112 123 117 123 51
HELIX 8 123 26
COLOUR_TEXT_REGION 8 123 26 123 50
HELIX 33 123 38
COLOUR_TEXT_REGION 33 123 38 123 50
HELIX 45 123 61
COLOUR_TEXT_REGION 45 123 61 123 50
HELIX 78 123 87
COLOUR_TEXT_REGION 78 123 87 123 50