SILENT_MODE BLOCK_FILE jp_oL3a2oC.concise.blc MAX_NSEQ 550 MAX_INPUT_LEN 552 OUTPUT_FILE jp_oL3a2oC.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 220 539 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 540 220 549 H SPACE SUB_CHARS 1 540 220 549 E SPACE SUB_CHARS 1 540 220 549 - SPACE HELIX 5 543 13 COLOUR_TEXT_REGION 5 543 13 543 50 HELIX 15 543 24 COLOUR_TEXT_REGION 15 543 24 543 50 HELIX 26 543 38 COLOUR_TEXT_REGION 26 543 38 543 50 HELIX 45 543 48 COLOUR_TEXT_REGION 45 543 48 543 50 HELIX 52 543 61 COLOUR_TEXT_REGION 52 543 61 543 50 HELIX 71 543 79 COLOUR_TEXT_REGION 71 543 79 543 50 HELIX 95 543 103 COLOUR_TEXT_REGION 95 543 103 543 50 HELIX 117 543 136 COLOUR_TEXT_REGION 117 543 136 543 50 HELIX 141 543 152 COLOUR_TEXT_REGION 141 543 152 543 50 HELIX 159 543 162 COLOUR_TEXT_REGION 159 543 162 543 50 HELIX 166 543 175 COLOUR_TEXT_REGION 166 543 175 543 50 HELIX 182 543 193 COLOUR_TEXT_REGION 182 543 193 543 50 HELIX 201 543 216 COLOUR_TEXT_REGION 201 543 216 543 50 HELIX 4 548 12 COLOUR_TEXT_REGION 4 548 12 548 50 HELIX 15 548 23 COLOUR_TEXT_REGION 15 548 23 548 50 HELIX 26 548 38 COLOUR_TEXT_REGION 26 548 38 548 50 HELIX 45 548 48 COLOUR_TEXT_REGION 45 548 48 548 50 HELIX 52 548 61 COLOUR_TEXT_REGION 52 548 61 548 50 HELIX 71 548 78 COLOUR_TEXT_REGION 71 548 78 548 50 HELIX 88 548 88 COLOUR_TEXT_REGION 88 548 88 548 50 HELIX 95 548 103 COLOUR_TEXT_REGION 95 548 103 548 50 HELIX 117 548 135 COLOUR_TEXT_REGION 117 548 135 548 50 HELIX 141 548 152 COLOUR_TEXT_REGION 141 548 152 548 50 HELIX 159 548 162 COLOUR_TEXT_REGION 159 548 162 548 50 HELIX 166 548 175 COLOUR_TEXT_REGION 166 548 175 548 50 HELIX 182 548 193 COLOUR_TEXT_REGION 182 548 193 548 50 HELIX 201 548 216 COLOUR_TEXT_REGION 201 548 216 548 50 HELIX 5 549 13 COLOUR_TEXT_REGION 5 549 13 549 50 HELIX 15 549 38 COLOUR_TEXT_REGION 15 549 38 549 50 HELIX 45 549 48 COLOUR_TEXT_REGION 45 549 48 549 50 HELIX 52 549 61 COLOUR_TEXT_REGION 52 549 61 549 50 HELIX 71 549 79 COLOUR_TEXT_REGION 71 549 79 549 50 HELIX 94 549 103 COLOUR_TEXT_REGION 94 549 103 549 50 HELIX 118 549 136 COLOUR_TEXT_REGION 118 549 136 549 50 HELIX 143 549 153 COLOUR_TEXT_REGION 143 549 153 549 50 HELIX 157 549 163 COLOUR_TEXT_REGION 157 549 163 549 50 HELIX 167 549 175 COLOUR_TEXT_REGION 167 549 175 549 50 HELIX 182 549 193 COLOUR_TEXT_REGION 182 549 193 549 50 HELIX 201 549 216 COLOUR_TEXT_REGION 201 549 216 549 50