SILENT_MODE
BLOCK_FILE jp_POXa8UL.concise.blc
MAX_NSEQ 605
MAX_INPUT_LEN 607
OUTPUT_FILE jp_POXa8UL.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 67 594   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 595 67 604 H SPACE
SUB_CHARS 1 595 67 604 E SPACE
SUB_CHARS 1 595 67 604 - SPACE
STRAND 7 598 13
COLOUR_TEXT_REGION 7 598 13 598 51
STRAND 30 598 35
COLOUR_TEXT_REGION 30 598 35 598 51
STRAND 41 598 47
COLOUR_TEXT_REGION 41 598 47 598 51
STRAND 51 598 55
COLOUR_TEXT_REGION 51 598 55 598 51
STRAND 61 598 62
COLOUR_TEXT_REGION 61 598 62 598 51
STRAND 6 603 13
COLOUR_TEXT_REGION 6 603 13 603 51
STRAND 30 603 35
COLOUR_TEXT_REGION 30 603 35 603 51
STRAND 41 603 47
COLOUR_TEXT_REGION 41 603 47 603 51
STRAND 51 603 55
COLOUR_TEXT_REGION 51 603 55 603 51
STRAND 60 603 62
COLOUR_TEXT_REGION 60 603 62 603 51
STRAND 8 604 14
COLOUR_TEXT_REGION 8 604 14 604 51
STRAND 30 604 36
COLOUR_TEXT_REGION 30 604 36 604 51
STRAND 41 604 47
COLOUR_TEXT_REGION 41 604 47 604 51
STRAND 52 604 56
COLOUR_TEXT_REGION 52 604 56 604 51
STRAND 61 604 63
COLOUR_TEXT_REGION 61 604 63 604 51