SILENT_MODE
BLOCK_FILE jp_N2fdt_4.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_N2fdt_4.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 95 5   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 6 95 15 H SPACE
SUB_CHARS 1 6 95 15 E SPACE
SUB_CHARS 1 6 95 15 - SPACE
STRAND 4 9 7
COLOUR_TEXT_REGION 4 9 7 9 51
STRAND 18 9 20
COLOUR_TEXT_REGION 18 9 20 9 51
STRAND 59 9 65
COLOUR_TEXT_REGION 59 9 65 9 51
STRAND 85 9 87
COLOUR_TEXT_REGION 85 9 87 9 51
HELIX 32 9 46
COLOUR_TEXT_REGION 32 9 46 9 50
HELIX 70 9 81
COLOUR_TEXT_REGION 70 9 81 9 50
HELIX 84 9 84
COLOUR_TEXT_REGION 84 9 84 9 50
STRAND 4 14 7
COLOUR_TEXT_REGION 4 14 7 14 51
STRAND 18 14 21
COLOUR_TEXT_REGION 18 14 21 14 51
STRAND 32 14 32
COLOUR_TEXT_REGION 32 14 32 14 51
STRAND 59 14 65
COLOUR_TEXT_REGION 59 14 65 14 51
STRAND 86 14 87
COLOUR_TEXT_REGION 86 14 87 14 51
HELIX 33 14 47
COLOUR_TEXT_REGION 33 14 47 14 50
HELIX 66 14 66
COLOUR_TEXT_REGION 66 14 66 14 50
HELIX 69 14 81
COLOUR_TEXT_REGION 69 14 81 14 50
HELIX 84 14 85
COLOUR_TEXT_REGION 84 14 85 14 50
STRAND 4 15 7
COLOUR_TEXT_REGION 4 15 7 15 51
STRAND 18 15 20
COLOUR_TEXT_REGION 18 15 20 15 51
STRAND 54 15 55
COLOUR_TEXT_REGION 54 15 55 15 51
STRAND 59 15 66
COLOUR_TEXT_REGION 59 15 66 15 51
STRAND 70 15 71
COLOUR_TEXT_REGION 70 15 71 15 51
STRAND 84 15 87
COLOUR_TEXT_REGION 84 15 87 15 51
HELIX 29 15 29
COLOUR_TEXT_REGION 29 15 29 15 50
HELIX 31 15 45
COLOUR_TEXT_REGION 31 15 45 15 50
HELIX 76 15 80
COLOUR_TEXT_REGION 76 15 80 15 50