SILENT_MODE
BLOCK_FILE jp_ZYi_9s_.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_ZYi_9s_.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 92 18   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 19 92 28 H SPACE
SUB_CHARS 1 19 92 28 E SPACE
SUB_CHARS 1 19 92 28 - SPACE
STRAND 80 22 85
COLOUR_TEXT_REGION 80 22 85 22 51
HELIX 5 22 17
COLOUR_TEXT_REGION 5 22 17 22 50
HELIX 20 22 22
COLOUR_TEXT_REGION 20 22 22 22 50
HELIX 32 22 62
COLOUR_TEXT_REGION 32 22 62 22 50
HELIX 67 22 77
COLOUR_TEXT_REGION 67 22 77 22 50
HELIX 86 22 89
COLOUR_TEXT_REGION 86 22 89 22 50
STRAND 80 27 84
COLOUR_TEXT_REGION 80 27 84 27 51
HELIX 5 27 17
COLOUR_TEXT_REGION 5 27 17 27 50
HELIX 20 27 21
COLOUR_TEXT_REGION 20 27 21 27 50
HELIX 32 27 62
COLOUR_TEXT_REGION 32 27 62 27 50
HELIX 65 27 78
COLOUR_TEXT_REGION 65 27 78 27 50
HELIX 86 27 90
COLOUR_TEXT_REGION 86 27 90 27 50
STRAND 80 28 86
COLOUR_TEXT_REGION 80 28 86 28 51
HELIX 5 28 16
COLOUR_TEXT_REGION 5 28 16 28 50
HELIX 20 28 23
COLOUR_TEXT_REGION 20 28 23 28 50
HELIX 32 28 63
COLOUR_TEXT_REGION 32 28 63 28 50
HELIX 67 28 76
COLOUR_TEXT_REGION 67 28 76 28 50
HELIX 87 28 87
COLOUR_TEXT_REGION 87 28 87 28 50