QUERY           : PDKTYEEMVKEVERLKLENKTLKQKVDSILTAAKRESIIVSSSRALGAVAMRKIEAKVRSRAAKAVTEQELTSLLQSLTLRVDVSMEELEHH : QUERY 
UniRef90_Q66654 : ---TPEELAEELVKLRMENKALKSKLDVVLTQAAKEAMVGSVVSGLTRSAAKQIEERIRKETLKATTKNEFEEVIKTLSFRVSLSYADL--- : UniRef90_Q66654
UniRef90_Q99CY9 : --------------------------DPIVTPAQREAMIGAATAALTSQASKKIEAKVRHHTSRAVTKEELEAAIANIRIRVDLSMEDV--- : UniRef90_Q99CY9
UniRef90_Q53CY1 : ----------------------RSGSDPVISNSEKEAKIAAAVSALCNVATRKIEAKVRAVTAKAVTRGQVEEALAGINIRVDVSMDE---- : UniRef90_Q53CY1
UniRef90_Q2HR80 : --------------------------DRPLTATEKEAQLTATVGALSAAAAKKIEARVRTIFSKVVTQKQVDDALKGLSLRIDVCMSD---- : UniRef90_Q2HR80
UniRef90_Q80BH4 : -----------------------SPNDEILTPSQKETIINSVVNSLTKNAEKKIRLRVSNDLLPLVTKHQCMEAIANIKYRIEVFPEE---- : UniRef90_Q80BH4
UniRef90_Q80BJ0 : --------------------------DEILTPSQKDALITSVVNKLTKQADEKIRIKVTKDLLPLVTKKQCMEAITILKYRIDVSTDE---- : UniRef90_Q80BJ0
UniRef90_Q01050 : -----------------------SPEDELLTPAQKDAIINSTVNKLTKKAEEKIRERVLKDVLPLVSKNQCMEAIAHIKYRIDVSIDE---- : UniRef90_Q01050
UniRef90_P0C717 : -----------------------------LTARQREVMITQATGRLASQAMKKIEDKVRKSVDGVTTRNEMENILQNLTLRIQVSM------ : UniRef90_P0C717
UniRef90_E9M5N5 : -----------------------SGGETVISPAKKESMILAACRSLSSLASTKIESKVRTKTAKIFTEQELVDALKGVRLRVDVSMEE---- : UniRef90_E9M5N5
UniRef90_Q993G3 : ---------------------------EVLTARQKQVLITQAISRLSSQAMQKIEQRVVAEMEDVRTRDEAEQKIQSLTIRIQVSMS----- : UniRef90_Q993G3
UniRef90_Q8JJP4 : -----------------------------LNPRQKQALISSYLTKFSSLATKKLEFKLATLTAPLQTKEEIEAVLEGTTIRLHLTLQDL--- : UniRef90_Q8JJP4
UniRef90_Q9YTL4 : --------------------------EEMLTPPQKEILINSLVSKLTKQAELKIRERVTKDLLPLVTKNQCMEAIADIKYRIDVSTKE---- : UniRef90_Q9YTL4
UniRef90_B1PHW1 : -----------------------SSDDSILIAAKRESIIVSSSRALGAVAMRKIEAKVRSRAAKAVTEQELTSLLQSLTLRVDVSMEE---- : UniRef90_B1PHW1
UniRef90_U5NIX8 : --------------------------DRPVSSMEKEARLVAAVSALSAAASKKIESRVRACIEKCVTVSQLENALSNLHMRIDLSLSE---- : UniRef90_U5NIX8

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91 :
OrigSeq         : PDKTYEEMVKEVERLKLENKTLKQKVDSILTAAKRESIIVSSSRALGAVAMRKIEAKVRSRAAKAVTEQELTSLLQSLTLRVDVSMEELEHH : OrigSeq

Jnet            : ----HHHHHHHHHHHHH--HHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH--EEEEEEHHHH--- : Jnet
jhmm            : ----HHHHHHHHHHHHH--HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-EEEEE-HHHHH-- : jhmm
jpssm           : ----HHHHHHHHHHHH---HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---EEEEEEEH----- : jpssm

Lupas 14        : ----cccccccCCCCCCCCCCCCCC------------------------------------------------------------------- : Lupas 14
Lupas 21        : ----CCCCCCCCCCCCCCCCCCCCCccccccc------------------------------------------------------------ : Lupas 21
Lupas 28        : ----CCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------------------------------------------------ : Lupas 28

Jnet_25         : ----B--BB--B--B-B----B------BB------BBBB-BB--BB--B---B---B---B--BBB---B--BB--B-BBB-BBB--B--- : Jnet_25
Jnet_5          : -------B---B--------------------------B---B--B---B---B---B--------B---B---B------B-BB------- : Jnet_5
Jnet_0          : ---------------------------------------------B---B-------B------------B----------B---------- : Jnet_0
Jnet Rel        : 99963889888876643444511256622332899999999999999999999999999986163117999988741344788711032099 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.