SILENT_MODE BLOCK_FILE jp_H7gSTdo.concise.blc MAX_NSEQ 955 MAX_INPUT_LEN 957 OUTPUT_FILE jp_H7gSTdo.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 147 944 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 945 147 954 H SPACE SUB_CHARS 1 945 147 954 E SPACE SUB_CHARS 1 945 147 954 - SPACE STRAND 25 948 29 COLOUR_TEXT_REGION 25 948 29 948 51 STRAND 46 948 49 COLOUR_TEXT_REGION 46 948 49 948 51 STRAND 111 948 111 COLOUR_TEXT_REGION 111 948 111 948 51 STRAND 125 948 130 COLOUR_TEXT_REGION 125 948 130 948 51 STRAND 139 948 144 COLOUR_TEXT_REGION 139 948 144 948 51 HELIX 11 948 19 COLOUR_TEXT_REGION 11 948 19 948 50 HELIX 58 948 68 COLOUR_TEXT_REGION 58 948 68 948 50 HELIX 73 948 80 COLOUR_TEXT_REGION 73 948 80 948 50 HELIX 89 948 102 COLOUR_TEXT_REGION 89 948 102 948 50 HELIX 114 948 121 COLOUR_TEXT_REGION 114 948 121 948 50 STRAND 25 953 29 COLOUR_TEXT_REGION 25 953 29 953 51 STRAND 46 953 49 COLOUR_TEXT_REGION 46 953 49 953 51 STRAND 75 953 80 COLOUR_TEXT_REGION 75 953 80 953 51 STRAND 125 953 130 COLOUR_TEXT_REGION 125 953 130 953 51 STRAND 139 953 144 COLOUR_TEXT_REGION 139 953 144 953 51 HELIX 11 953 19 COLOUR_TEXT_REGION 11 953 19 953 50 HELIX 59 953 66 COLOUR_TEXT_REGION 59 953 66 953 50 HELIX 89 953 102 COLOUR_TEXT_REGION 89 953 102 953 50 HELIX 114 953 121 COLOUR_TEXT_REGION 114 953 121 953 50 STRAND 25 954 28 COLOUR_TEXT_REGION 25 954 28 954 51 STRAND 47 954 49 COLOUR_TEXT_REGION 47 954 49 954 51 STRAND 110 954 112 COLOUR_TEXT_REGION 110 954 112 954 51 STRAND 125 954 130 COLOUR_TEXT_REGION 125 954 130 954 51 STRAND 139 954 144 COLOUR_TEXT_REGION 139 954 144 954 51 HELIX 10 954 20 COLOUR_TEXT_REGION 10 954 20 954 50 HELIX 57 954 81 COLOUR_TEXT_REGION 57 954 81 954 50 HELIX 89 954 102 COLOUR_TEXT_REGION 89 954 102 954 50 HELIX 114 954 122 COLOUR_TEXT_REGION 114 954 122 954 50