SILENT_MODE
BLOCK_FILE jp_OiWtbu2.concise.blc
MAX_NSEQ 845
MAX_INPUT_LEN 847
OUTPUT_FILE jp_OiWtbu2.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 51 834   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 835 51 844 H SPACE
SUB_CHARS 1 835 51 844 E SPACE
SUB_CHARS 1 835 51 844 - SPACE
STRAND 26 838 30
COLOUR_TEXT_REGION 26 838 30 838 51
STRAND 35 838 39
COLOUR_TEXT_REGION 35 838 39 838 51
HELIX 4 838 21
COLOUR_TEXT_REGION 4 838 21 838 50
HELIX 41 838 48
COLOUR_TEXT_REGION 41 838 48 838 50
STRAND 4 843 4
COLOUR_TEXT_REGION 4 843 4 843 51
STRAND 25 843 30
COLOUR_TEXT_REGION 25 843 30 843 51
STRAND 35 843 39
COLOUR_TEXT_REGION 35 843 39 843 51
HELIX 5 843 21
COLOUR_TEXT_REGION 5 843 21 843 50
HELIX 41 843 49
COLOUR_TEXT_REGION 41 843 49 843 50
STRAND 26 844 30
COLOUR_TEXT_REGION 26 844 30 844 51
STRAND 34 844 40
COLOUR_TEXT_REGION 34 844 40 844 51
HELIX 4 844 22
COLOUR_TEXT_REGION 4 844 22 844 50
HELIX 41 844 47
COLOUR_TEXT_REGION 41 844 47 844 50