SILENT_MODE BLOCK_FILE jp_rqxRqBl.concise.blc MAX_NSEQ 176 MAX_INPUT_LEN 178 OUTPUT_FILE jp_rqxRqBl.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 152 165 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 166 152 175 H SPACE SUB_CHARS 1 166 152 175 E SPACE SUB_CHARS 1 166 152 175 - SPACE HELIX 5 169 22 COLOUR_TEXT_REGION 5 169 22 169 50 HELIX 31 169 47 COLOUR_TEXT_REGION 31 169 47 169 50 HELIX 49 169 60 COLOUR_TEXT_REGION 49 169 60 169 50 HELIX 83 169 99 COLOUR_TEXT_REGION 83 169 99 169 50 HELIX 113 169 121 COLOUR_TEXT_REGION 113 169 121 169 50 HELIX 125 169 149 COLOUR_TEXT_REGION 125 169 149 169 50 HELIX 5 174 22 COLOUR_TEXT_REGION 5 174 22 174 50 HELIX 32 174 47 COLOUR_TEXT_REGION 32 174 47 174 50 HELIX 50 174 60 COLOUR_TEXT_REGION 50 174 60 174 50 HELIX 83 174 98 COLOUR_TEXT_REGION 83 174 98 174 50 HELIX 113 174 121 COLOUR_TEXT_REGION 113 174 121 174 50 HELIX 125 174 149 COLOUR_TEXT_REGION 125 174 149 174 50 HELIX 5 175 23 COLOUR_TEXT_REGION 5 175 23 175 50 HELIX 29 175 61 COLOUR_TEXT_REGION 29 175 61 175 50 HELIX 71 175 72 COLOUR_TEXT_REGION 71 175 72 175 50 HELIX 83 175 99 COLOUR_TEXT_REGION 83 175 99 175 50 HELIX 113 175 121 COLOUR_TEXT_REGION 113 175 121 175 50 HELIX 125 175 149 COLOUR_TEXT_REGION 125 175 149 175 50