SILENT_MODE BLOCK_FILE jp_NBYDCrK.concise.blc MAX_NSEQ 310 MAX_INPUT_LEN 312 OUTPUT_FILE jp_NBYDCrK.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 241 299 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 300 241 309 H SPACE SUB_CHARS 1 300 241 309 E SPACE SUB_CHARS 1 300 241 309 - SPACE STRAND 4 303 7 COLOUR_TEXT_REGION 4 303 7 303 51 STRAND 177 303 181 COLOUR_TEXT_REGION 177 303 181 303 51 STRAND 186 303 186 COLOUR_TEXT_REGION 186 303 186 303 51 STRAND 195 303 200 COLOUR_TEXT_REGION 195 303 200 303 51 STRAND 207 303 211 COLOUR_TEXT_REGION 207 303 211 303 51 STRAND 215 303 221 COLOUR_TEXT_REGION 215 303 221 303 51 STRAND 235 303 239 COLOUR_TEXT_REGION 235 303 239 303 51 HELIX 12 303 30 COLOUR_TEXT_REGION 12 303 30 303 50 HELIX 37 303 53 COLOUR_TEXT_REGION 37 303 53 303 50 HELIX 59 303 77 COLOUR_TEXT_REGION 59 303 77 303 50 HELIX 84 303 102 COLOUR_TEXT_REGION 84 303 102 303 50 HELIX 109 303 123 COLOUR_TEXT_REGION 109 303 123 303 50 HELIX 132 303 138 COLOUR_TEXT_REGION 132 303 138 303 50 HELIX 142 303 171 COLOUR_TEXT_REGION 142 303 171 303 50 STRAND 4 308 7 COLOUR_TEXT_REGION 4 308 7 308 51 STRAND 177 308 181 COLOUR_TEXT_REGION 177 308 181 308 51 STRAND 186 308 186 COLOUR_TEXT_REGION 186 308 186 308 51 STRAND 195 308 200 COLOUR_TEXT_REGION 195 308 200 308 51 STRAND 207 308 211 COLOUR_TEXT_REGION 207 308 211 308 51 STRAND 215 308 220 COLOUR_TEXT_REGION 215 308 220 308 51 STRAND 235 308 239 COLOUR_TEXT_REGION 235 308 239 308 51 HELIX 12 308 30 COLOUR_TEXT_REGION 12 308 30 308 50 HELIX 38 308 52 COLOUR_TEXT_REGION 38 308 52 308 50 HELIX 60 308 77 COLOUR_TEXT_REGION 60 308 77 308 50 HELIX 82 308 102 COLOUR_TEXT_REGION 82 308 102 308 50 HELIX 107 308 111 COLOUR_TEXT_REGION 107 308 111 308 50 HELIX 115 308 123 COLOUR_TEXT_REGION 115 308 123 308 50 HELIX 132 308 138 COLOUR_TEXT_REGION 132 308 138 308 50 HELIX 142 308 172 COLOUR_TEXT_REGION 142 308 172 308 50 STRAND 4 309 6 COLOUR_TEXT_REGION 4 309 6 309 51 STRAND 176 309 181 COLOUR_TEXT_REGION 176 309 181 309 51 STRAND 186 309 186 COLOUR_TEXT_REGION 186 309 186 309 51 STRAND 194 309 200 COLOUR_TEXT_REGION 194 309 200 309 51 STRAND 207 309 211 COLOUR_TEXT_REGION 207 309 211 309 51 STRAND 215 309 222 COLOUR_TEXT_REGION 215 309 222 309 51 STRAND 235 309 239 COLOUR_TEXT_REGION 235 309 239 309 51 HELIX 12 309 31 COLOUR_TEXT_REGION 12 309 31 309 50 HELIX 36 309 53 COLOUR_TEXT_REGION 36 309 53 309 50 HELIX 58 309 77 COLOUR_TEXT_REGION 58 309 77 309 50 HELIX 84 309 102 COLOUR_TEXT_REGION 84 309 102 309 50 HELIX 110 309 123 COLOUR_TEXT_REGION 110 309 123 309 50 HELIX 131 309 138 COLOUR_TEXT_REGION 131 309 138 309 50 HELIX 142 309 170 COLOUR_TEXT_REGION 142 309 170 309 50