SILENT_MODE
BLOCK_FILE jp_QGGTYoU.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_QGGTYoU.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 141 38   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 39 141 48 H SPACE
SUB_CHARS 1 39 141 48 E SPACE
SUB_CHARS 1 39 141 48 - SPACE
STRAND 2 42 10
COLOUR_TEXT_REGION 2 42 10 42 51
STRAND 15 42 21
COLOUR_TEXT_REGION 15 42 21 42 51
STRAND 25 42 26
COLOUR_TEXT_REGION 25 42 26 42 51
STRAND 32 42 35
COLOUR_TEXT_REGION 32 42 35 42 51
STRAND 39 42 44
COLOUR_TEXT_REGION 39 42 44 42 51
STRAND 50 42 56
COLOUR_TEXT_REGION 50 42 56 42 51
STRAND 62 42 70
COLOUR_TEXT_REGION 62 42 70 42 51
STRAND 76 42 81
COLOUR_TEXT_REGION 76 42 81 42 51
STRAND 89 42 91
COLOUR_TEXT_REGION 89 42 91 42 51
STRAND 121 42 128
COLOUR_TEXT_REGION 121 42 128 42 51
STRAND 133 42 139
COLOUR_TEXT_REGION 133 42 139 42 51
STRAND 3 47 10
COLOUR_TEXT_REGION 3 47 10 47 51
STRAND 15 47 22
COLOUR_TEXT_REGION 15 47 22 47 51
STRAND 25 47 26
COLOUR_TEXT_REGION 25 47 26 47 51
STRAND 32 47 35
COLOUR_TEXT_REGION 32 47 35 47 51
STRAND 39 47 44
COLOUR_TEXT_REGION 39 47 44 47 51
STRAND 51 47 56
COLOUR_TEXT_REGION 51 47 56 47 51
STRAND 62 47 70
COLOUR_TEXT_REGION 62 47 70 47 51
STRAND 76 47 80
COLOUR_TEXT_REGION 76 47 80 47 51
STRAND 122 47 128
COLOUR_TEXT_REGION 122 47 128 47 51
STRAND 133 47 139
COLOUR_TEXT_REGION 133 47 139 47 51
HELIX 88 47 91
COLOUR_TEXT_REGION 88 47 91 47 50
HELIX 106 47 108
COLOUR_TEXT_REGION 106 47 108 47 50
STRAND 2 48 10
COLOUR_TEXT_REGION 2 48 10 48 51
STRAND 16 48 21
COLOUR_TEXT_REGION 16 48 21 48 51
STRAND 24 48 27
COLOUR_TEXT_REGION 24 48 27 48 51
STRAND 39 48 44
COLOUR_TEXT_REGION 39 48 44 48 51
STRAND 50 48 56
COLOUR_TEXT_REGION 50 48 56 48 51
STRAND 62 48 69
COLOUR_TEXT_REGION 62 48 69 48 51
STRAND 76 48 82
COLOUR_TEXT_REGION 76 48 82 48 51
STRAND 89 48 92
COLOUR_TEXT_REGION 89 48 92 48 51
STRAND 95 48 95
COLOUR_TEXT_REGION 95 48 95 48 51
STRAND 114 48 114
COLOUR_TEXT_REGION 114 48 114 48 51
STRAND 121 48 128
COLOUR_TEXT_REGION 121 48 128 48 51
STRAND 133 48 139
COLOUR_TEXT_REGION 133 48 139 48 51