QUERY : TYKITVRVYQTNPNAFFHPVEKTVWKYANGGTWTITDDQHVLTMGGSGTSGTLRFHADNGESFTATFGVHNYKRWCDIVTNLAADETGMVINQQYYSQKNREEARERQLSNYEVKNAKGRNFEIVYTEAEGNDLHANLIIG : QUERY
UniRef90_Q96WQ5 : SYTIKVRVYQTNPNAFFRIVEQGVWHYANGGTWSDKDGVLTLTMGGSGTSGMLRFMTEQGEAFFIAMGVHNYKRWVDIVTGLANDVTCVRALPEYYGDKERAQSREAQRITQSVLNIDRRNISATYSVAEGNNLELNIVIG : UniRef90_Q96WQ5
UniRef90_A1DZ79 : TYSIHVRVIQTKPSAWYSIVEKTVWYFAQGATWRDVDGEQILTMGESGTSGLLRFENPQGDFFLVAVGVHNYKRWCDIVPDLKSTETGTAIHPTYYDNGPRNEMLWKQLASIEKKTSKGENIKVDYYKEDGNNLYATITI- : UniRef90_A1DZ79
UniRef90_G1XEQ3 : SYAIKVRIYQTNENAFFRVIEKGVWHYANGGTWTEQDGALLLTIGGSGTSGIIRLQTEQGEAFFVAFGVHNYKPWLDIITGLGDDITGVRALPEYYNNPERVKSREAQRTSQSILNIDHRTIAAHYKVAEGHELELNLVL- : UniRef90_G1XEQ3
UniRef90_Q8WZC9 : SYSITLRVYQTNRDGYFSIVEKTVWHFANGGTWSEANGAHTLTQGGSGTSGVLRFLSTKGERITVAVGVHNYKRWCDVVTGLKPDETALVINPQYYNNGGRDYVREKQLAEYSVTSAIGTKVEVVYTVAEGNNLEANVIF- : UniRef90_Q8WZC9
UniRef90_Q5V8L0 : SYSIKLRIHQPNAGGFFSIVESTVWNYANGGTWSDADGNQTLTMGGSGTSGTLRFMSDSGERLIVAIGVHNYKRWCDIATGLAPNATGVVVNGEYYNSGKRAYMREKQLSQYSVTSPAGTKVAIKYTVADGNCLEADVTIG : UniRef90_Q5V8L0
UniRef90_UPI000441629F : SYTITVSVYQTSPSCFFNIVEKICFNYGGGGTWSEEGGRHVLRMGASGTSGGLLFQSDTGERIFVVLGVHNYARWCDVVTGLVGHDTALVLLPQYYGGGSRAFMREKTLPVYGVTSAKGRRTEVKYSVYDGHELKADIIIG : UniRef90_UPI000441629F
UniRef90_A0A016PB24 : SYTIKVRVYQTNPNAYFHIVEKGCWHYANGSQWNEQNGILTLSMGGSGTSGMLRFKTEQNEGFFVAMGVHNYKPWVDTITGLGDDITCVKALPEYYGNSDRTRSRESQRTEQTILNIDRRNISTHYKVKEGNNLELDITIG : UniRef90_A0A016PB24
UniRef90_Q00022 : TYTISIRVYQTTPKGFFRPVERTNWKYANGGTWDEVRGEYVLTMGGSGTSGSLRFSSDTDESFVATFGVHNYKRWCDIVTNLTNEQTALVINQEYYGVPIRDQARENQLTSYNVANAKGRRFAIEYTVTEGDNLKANLIIG : UniRef90_Q00022
UniRef90_A1DZ76 : SYTIRVRVIESKPTAWYSVVEKCNWLY--GGYWTEVDGEHFLHMDASGTSGMLRFRNPAGEFFLVALGVHNYKRWCDIVVDQKNTNTGVEILPTYYNNGSRQEMLWKQLATYEKKTSKGETIKVNYYKEDGNSLYATITI- : UniRef90_A1DZ76
UniRef90_UPI000440C88B : SYTVTVRVFQTNPSSFFEIIEKCVFNYGGGGAWTESNDQQVLRMNSSGTCGTLRFESDRNERFIVALGVHNYERWCDVVTGLVPHDTGVVITPEWY-GAKRSYMREKTLKDYSVTSATGRNIEVKYTVAEGHELKADIIIG : UniRef90_UPI000440C88B
UniRef90_K5VXA2 : SYTITVRVYQTSTNAFFRVVEKIVWHEANGGTWDESCGEHILTLGGSGTSGALRFESDTGENFLAAFGVHSYKRWCDIVTGLEPRQTGTLVLGEYYTDRGRAYMRERQAASYGVESLKPRGFNVAYTVADGKNLRANIVIG : UniRef90_K5VXA2
UniRef90_J0CS35 : SYTFTVRVRQTTASEWAELVESTVWHFANGGTWRAARGELVFTMGGSGTSGLLRFARGNDEYCVFAMGVHNYKPWTDCVVDCKPGETACNMHPDYYGGGERAKQREKQQRETCKKDCKGREYKIVCS-GEGNSCVVEIFI- : UniRef90_J0CS35
UniRef90_F9G7V1 : -YTVKVRVYQTNQNAYFHVVEKACWHYTDGCEWTEQNGVLSLYMGDSGTAGLLRFKNEQGEAFSVTLGVHMYKPWVDIITGLADNITGVQSLPEYYGETDKTKRRESQKTEQTVLNIDRRNISAKYRVKEGENLELDIIIG : UniRef90_F9G7V1
UniRef90_J4UPT0 : SYNVQVRVFQSDHKTFFYTVEQGVWKYANGGTWVPHNGGQRLTMGGSGTSGMLRFLADVGEIFVIAVGIHNNKPWCDIVANVVPGNTAVAILAEYYNDPARVKAREAQRSKWSAKNNEGRTIEASFRSTEGHDLNLDITIG : UniRef90_J4UPT0
UniRef90_G4TTF2 : SYKIRVRIYQTKPDAFFRVVEQSVW---TGGSWTKNGDEFILDMHTSGTSGALRLLADNGEHIIAVFGVHNYKRWCDIVTALGKDASGTKLLPEWYVEGNRGKVKWSQLAEYNVTTPVRRNFAIKYTIPEGNDLVATLFVG : UniRef90_G4TTF2
UniRef90_W6Q0R3 : SYTIRLRVENSTSDA-LTVVEKTCWYYANGCTWTENDGQHVLFMGGSGTSGMLRFKSSFGEIFTIVVGIHNYKLWCGLLWDLGDQDTALKLHPEFYRGGKYSHATPD--ACYSPVTHATR-ASITFERENQNEVFAVLK-- : UniRef90_W6Q0R3
UniRef90_Q0C8T8 : AYTINLTVRNRTGDT-LTVVEKACWHYANGGTWTERHGQHILSMGGSGTSGMLRFQSSSGDMFSVVLGIHNYKPWCDVQVKLRDEDTTATMLPEYYSGGKFSNRANPELKNVDV--SENRGLDLVFETTEGHELSAVL--- : UniRef90_Q0C8T8
UniRef90_A1D8S8 : SYTIRLCIDNGTSD-ILTIVEKTCWYYANGCTWTVKDDEHVLFMGGSGTSGMLRFKTSSGDFFTVVLGMHNYNPWSGLLVNLREDDTALKLHPEYYNGGKFSHSAPDAA--YTPPTAHGKNVWISVERKDENEVFAVL--- : UniRef90_A1D8S8
UniRef90_UPI00044107ED : AYVFTVRVHQTKKDAHKSVVEETVWHHGNGGTWHQADGAHVLTMGETGTSGALRFQAGEGDLYFFVMGVDAHKPWVDCLVDLKHNQTCCALHPTYYENKHRCAEREKHEKEVCKKDCKGREYKICCHPQSEKHCIVEI--- : UniRef90_UPI00044107ED
UniRef90_G4TWV3 : AYQITVRVFQTNSNAFFRCVEQSVF---SSGTWTSTSDTYVLNMTGSGTSGSLRLEADTGERIIAVFGVHNYKRWCDIVTALTPADSGTKLLPEWYVEGDRGKVKWSQLAEYSVTSTAPRKYSIKYVVADGNN-------- : UniRef90_G4TWV3
UniRef90_E9FCT6 : SYTIKVHIYQENTNAFFHIVEKTVFR---NGTWGETNGAQILTMGGSGTAGSLRFLANTGESCIVTLGVHNYKPWGDIVTKLDPSQTGVVITPEYYQKKERVDMRWKTLSHYDVT-RDGRKYSFKYTEIKDKHLEVNFII- : UniRef90_E9FCT6
UniRef90_Q7S609 : SYTIHLRLINDTSDS-LQLVEQTCW-FGHGTRWSQIDGVYVLSMNNSGSSGMLRFQNSKGDYFAVAVGVHNYKRWCDIQVDTADDAPLTKLHPKYYDEKDAYKALWAQASEFEAKAKSGKTVRIKFYQAEGNVLRATV--- : UniRef90_Q7S609
UniRef90_B6GYA3 : TYIIPVAIVNET-NEVLTVVEKTCWYYANGGTWTEEKDKLVLEMGGSGTSGMLRIKTTSGTTFSVIVGYHNYDFWCDAQVNLHDDDTAVKLHPEYYNGGILSHE---ARPITERTTSAGRTVKV----------------- : UniRef90_B6GYA3
UniRef90_Q0CHJ5 : -------IYNET-NESLRVVERTCWHYANGATWTDDN---VLEMGGSGTSGMLRIKTSSGEIFTVIVGFHNNDPWCDAQVNLKDHDTAVKLHPEYYNGGS---LSGQASTGVTRTTLKGRTVKVQFR-------------- : UniRef90_Q0CHJ5
UniRef90_J3K648 : ---ISLSIVDSTGDE-FNVVEESGWHYGNRAQWKKSRAGYILYMGGSGTSGMLQFESSTGETFLLAMGIHSYKRWCNFVVDLEDDATAKDFHPRCYTGGGAQQL-WDQSLKCKATISDGTGY------------------- : UniRef90_J3K648
UniRef90_K5WUR4 : TYTISVRV---QSDTRVQLVESSVWHYANGGTWSAAPDSFVLTMAGSGTSGMLRFQLPSGELFAIAVGIHNYAPWSGVAVDIGPSDTLQVVHKEFYAGGPRSSPTLKD----SVGNSKGLSAGVLYNDTESNDYKAVIAI- : UniRef90_K5WUR4
UniRef90_A2QUV4 : -YTLPVAIINDTEDV-LTVIEKTCWYYANSGAWTEDAGKLTLTLGGSGTSGMLRIRASSGHTFSVV------DFWCDAQVDLHDDDTAVKLHPGYYNGG---RLSSQANSSIERKCSAGRTVKVH---------------- : UniRef90_A2QUV4
UniRef90_W7MST8 : -YTVKVRVYQTNQNAYFHIVEKACWHYTDGCEWNEQNGVLSLYMGDSGTAGLLRFKNEEGEAFSVAVGVHMYKPWIDIITGLADHITGAQSLPEY---------------------------------------------- : UniRef90_W7MST8
UniRef90_B8PME8 : -YTITVHTRN-QSNVGFGIVEKSVWH---KGTWSSRNGCQLLRIDGSGTSGVLQYRNETGEAFLIAVGVHNNGKWCDVMMDLTRNDSAAAKHRSWFNGPSVHQAKWKKQDNIQRKGLAGSNSG--YQDDSGWHYDVDVTI- : UniRef90_B8PME8
UniRef90_C5P3H2 : AYSISFSIVDSTGDE-FNVVKESGWHYAHNGRNLEPAISYIWEVG-------------------VLLECYDSSR------RLKRHDTAKDFHPRYYTGGGAQQLRD-QSPNCKATISDGTVIKLNFSVTEGNRLRADLKIG : UniRef90_C5P3H2
UniRef90_F0XAN1 : -----------------------------GSSVEPTFDGHKLIMKGSGTSGLLRFRSSNGEEVGIVVGVHNYKRWCHIVTDFGINETSHARRAKYYSDDAAFSGQWAQAESFTTTSSKGRPVLIDYFVKEGNDMHATVK-- : UniRef90_F0XAN1
UniRef90_B0DN20 : SYTVEISIYRESAPEFFNIVERGVWHYANGGTWTQAAGKEILTMGGSGTSGGLRFKNASGNAFFLVVGVHNYSLWLDVLPNIEDKDTTVALLPTYY--------------------------------------------- : UniRef90_B0DN20
UniRef90_E9DEM4 : ------------------------------------------------------------------MGIHSYKRWCDLVVDLEDDATAKDFHPRYYTGGGAQQLRD-QSPNCKATISDGTVIKLNFSVTEGNRLRADLKIG : UniRef90_E9DEM4
UniRef90_B2WLK1 : -YTFKVDFRSVSLNGFYSPVSDNRWNI------SGSNGGFLYTAIGSGNYGGLLFNNETGEEFVVIVGIHNYKTWLDITT-IGPSETFEHAVDEYYHDGNRCEMQWKALDRMRKSLSRGMSASAMIENGESKHQFVV---- : UniRef90_B2WLK1
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131------- :
OrigSeq : TYKITVRVYQTNPNAFFHPVEKTVWKYANGGTWTITDDQHVLTMGGSGTSGTLRFHADNGESFTATFGVHNYKRWCDIVTNLAADETGMVINQQYYSQKNREEARERQLSNYEVKNAKGRNFEIVYTEAEGNDLHANLIIG : OrigSeq
Jnet : -EEEEEEEEE----EEEEEEE---EE-----EEEE---EEEEEE-----EEEEEEE-----EEEEEEEEE-----EEEEEE-------EEE-----------------------------EEEEEEEE----EEEEEEE-- : Jnet
jhmm : --EEEEEEEE----EEEEEEEE--EE-----EEEE---EEEEEE------EEEEEE-----EEEEEEEEE-----EEEEE-------HHHH--------------HHH-------------EEEEEEE----EEEEEEE-- : jhmm
jpssm : -EEEEEEEEE-----EEEEEE--EEEE-----------EEEEEE-----EEEEEEE-----EEEEEEEE------EEEEEEE------EEEE--E------------------E------EEEEEEEE----EEEEEEE-- : jpssm
Lupas 14 : --------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : --------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : --------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : ---B-BBBB-----BBBBBBB-BBB-BB--B-B----B-BBBBB--BBBBBBBBB-B--B-BBBBBBBBBBB--BB-BBB-B-----BB-BB--BB----BB------B--B---B-----B-B-B-------B-B-B-B- : Jnet_25
Jnet_5 : -----B-B--------B-BB---BB-----B----------B-B-----BB-B-B-------BBBBBBB-----BB-BB--B-----B--B--------------------------------B-B---------B-B-B- : Jnet_5
Jnet_0 : --------------------------------------------------B-B---------BBBBB-B------------------B-----------------------------------B-----------B----- : Jnet_0
Jnet Rel : 707899999648881689860050771477524316761688853788507777625888458898886178886168882357875123222024677776665211466512367874188999864885589998639 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.