SILENT_MODE
BLOCK_FILE jp_tYl5JhV.concise.blc
MAX_NSEQ 125
MAX_INPUT_LEN 127
OUTPUT_FILE jp_tYl5JhV.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 121 114   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 115 121 124 H SPACE
SUB_CHARS 1 115 121 124 E SPACE
SUB_CHARS 1 115 121 124 - SPACE
STRAND 65 118 73
COLOUR_TEXT_REGION 65 118 73 118 51
STRAND 80 118 83
COLOUR_TEXT_REGION 80 118 83 118 51
STRAND 87 118 95
COLOUR_TEXT_REGION 87 118 95 118 51
STRAND 98 118 107
COLOUR_TEXT_REGION 98 118 107 118 51
STRAND 115 118 119
COLOUR_TEXT_REGION 115 118 119 118 51
HELIX 9 118 13
COLOUR_TEXT_REGION 9 118 13 118 50
HELIX 19 118 39
COLOUR_TEXT_REGION 19 118 39 118 50
HELIX 48 118 60
COLOUR_TEXT_REGION 48 118 60 118 50
STRAND 40 123 40
COLOUR_TEXT_REGION 40 123 40 123 51
STRAND 65 123 73
COLOUR_TEXT_REGION 65 123 73 123 51
STRAND 80 123 83
COLOUR_TEXT_REGION 80 123 83 123 51
STRAND 87 123 95
COLOUR_TEXT_REGION 87 123 95 123 51
STRAND 98 123 106
COLOUR_TEXT_REGION 98 123 106 123 51
STRAND 115 123 120
COLOUR_TEXT_REGION 115 123 120 123 51
HELIX 9 123 13
COLOUR_TEXT_REGION 9 123 13 123 50
HELIX 19 123 38
COLOUR_TEXT_REGION 19 123 38 123 50
HELIX 48 123 60
COLOUR_TEXT_REGION 48 123 60 123 50
STRAND 65 124 73
COLOUR_TEXT_REGION 65 124 73 124 51
STRAND 79 124 83
COLOUR_TEXT_REGION 79 124 83 124 51
STRAND 86 124 95
COLOUR_TEXT_REGION 86 124 95 124 51
STRAND 98 124 107
COLOUR_TEXT_REGION 98 124 107 124 51
STRAND 114 124 119
COLOUR_TEXT_REGION 114 124 119 124 51
HELIX 9 124 12
COLOUR_TEXT_REGION 9 124 12 124 50
HELIX 19 124 39
COLOUR_TEXT_REGION 19 124 39 124 50
HELIX 48 124 60
COLOUR_TEXT_REGION 48 124 60 124 50