SILENT_MODE
BLOCK_FILE jp_zA41fNl.concise.blc
MAX_NSEQ 56
MAX_INPUT_LEN 58
OUTPUT_FILE jp_zA41fNl.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 110 45   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 46 110 55 H SPACE
SUB_CHARS 1 46 110 55 E SPACE
SUB_CHARS 1 46 110 55 - SPACE
STRAND 8 49 11
COLOUR_TEXT_REGION 8 49 11 49 51
STRAND 17 49 17
COLOUR_TEXT_REGION 17 49 17 49 51
STRAND 37 49 43
COLOUR_TEXT_REGION 37 49 43 49 51
STRAND 51 49 56
COLOUR_TEXT_REGION 51 49 56 49 51
STRAND 88 49 92
COLOUR_TEXT_REGION 88 49 92 49 51
STRAND 99 49 107
COLOUR_TEXT_REGION 99 49 107 49 51
STRAND 8 54 11
COLOUR_TEXT_REGION 8 54 11 54 51
STRAND 17 54 18
COLOUR_TEXT_REGION 17 54 18 54 51
STRAND 36 54 43
COLOUR_TEXT_REGION 36 54 43 54 51
STRAND 51 54 56
COLOUR_TEXT_REGION 51 54 56 54 51
STRAND 79 54 80
COLOUR_TEXT_REGION 79 54 80 54 51
STRAND 88 54 92
COLOUR_TEXT_REGION 88 54 92 54 51
STRAND 99 54 103
COLOUR_TEXT_REGION 99 54 103 54 51
HELIX 104 54 106
COLOUR_TEXT_REGION 104 54 106 54 50
STRAND 8 55 11
COLOUR_TEXT_REGION 8 55 11 55 51
STRAND 39 55 43
COLOUR_TEXT_REGION 39 55 43 55 51
STRAND 51 55 56
COLOUR_TEXT_REGION 51 55 56 55 51
STRAND 88 55 93
COLOUR_TEXT_REGION 88 55 93 55 51
STRAND 99 55 107
COLOUR_TEXT_REGION 99 55 107 55 51