SILENT_MODE
BLOCK_FILE jp_8mh9ExB.concise.blc
MAX_NSEQ 105
MAX_INPUT_LEN 107
OUTPUT_FILE jp_8mh9ExB.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 122 94   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 95 122 104 H SPACE
SUB_CHARS 1 95 122 104 E SPACE
SUB_CHARS 1 95 122 104 - SPACE
STRAND 2 98 5
COLOUR_TEXT_REGION 2 98 5 98 51
HELIX 12 98 24
COLOUR_TEXT_REGION 12 98 24 98 50
HELIX 27 98 54
COLOUR_TEXT_REGION 27 98 54 98 50
HELIX 60 98 84
COLOUR_TEXT_REGION 60 98 84 98 50
HELIX 89 98 114
COLOUR_TEXT_REGION 89 98 114 98 50
STRAND 2 103 5
COLOUR_TEXT_REGION 2 103 5 103 51
STRAND 60 103 60
COLOUR_TEXT_REGION 60 103 60 103 51
HELIX 12 103 24
COLOUR_TEXT_REGION 12 103 24 103 50
HELIX 29 103 54
COLOUR_TEXT_REGION 29 103 54 103 50
HELIX 61 103 84
COLOUR_TEXT_REGION 61 103 84 103 50
HELIX 90 103 101
COLOUR_TEXT_REGION 90 103 101 103 50
HELIX 103 103 114
COLOUR_TEXT_REGION 103 103 114 103 50
STRAND 2 104 6
COLOUR_TEXT_REGION 2 104 6 104 51
HELIX 12 104 24
COLOUR_TEXT_REGION 12 104 24 104 50
HELIX 27 104 54
COLOUR_TEXT_REGION 27 104 54 104 50
HELIX 59 104 84
COLOUR_TEXT_REGION 59 104 84 104 50
HELIX 89 104 114
COLOUR_TEXT_REGION 89 104 114 104 50