SILENT_MODE
BLOCK_FILE jp_pN3v8Ye.concise.blc
MAX_NSEQ 1120
MAX_INPUT_LEN 1122
OUTPUT_FILE jp_pN3v8Ye.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 105 1109   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1110 105 1119 H SPACE
SUB_CHARS 1 1110 105 1119 E SPACE
SUB_CHARS 1 1110 105 1119 - SPACE
STRAND 20 1113 25
COLOUR_TEXT_REGION 20 1113 25 1113 51
STRAND 29 1113 30
COLOUR_TEXT_REGION 29 1113 30 1113 51
STRAND 34 1113 38
COLOUR_TEXT_REGION 34 1113 38 1113 51
STRAND 42 1113 47
COLOUR_TEXT_REGION 42 1113 47 1113 51
STRAND 53 1113 57
COLOUR_TEXT_REGION 53 1113 57 1113 51
STRAND 77 1113 82
COLOUR_TEXT_REGION 77 1113 82 1113 51
STRAND 87 1113 92
COLOUR_TEXT_REGION 87 1113 92 1113 51
STRAND 99 1113 104
COLOUR_TEXT_REGION 99 1113 104 1113 51
STRAND 20 1118 25
COLOUR_TEXT_REGION 20 1118 25 1118 51
STRAND 29 1118 30
COLOUR_TEXT_REGION 29 1118 30 1118 51
STRAND 34 1118 38
COLOUR_TEXT_REGION 34 1118 38 1118 51
STRAND 42 1118 47
COLOUR_TEXT_REGION 42 1118 47 1118 51
STRAND 54 1118 57
COLOUR_TEXT_REGION 54 1118 57 1118 51
STRAND 77 1118 82
COLOUR_TEXT_REGION 77 1118 82 1118 51
STRAND 87 1118 92
COLOUR_TEXT_REGION 87 1118 92 1118 51
STRAND 99 1118 104
COLOUR_TEXT_REGION 99 1118 104 1118 51
STRAND 20 1119 25
COLOUR_TEXT_REGION 20 1119 25 1119 51
STRAND 30 1119 30
COLOUR_TEXT_REGION 30 1119 30 1119 51
STRAND 34 1119 37
COLOUR_TEXT_REGION 34 1119 37 1119 51
STRAND 42 1119 47
COLOUR_TEXT_REGION 42 1119 47 1119 51
STRAND 53 1119 57
COLOUR_TEXT_REGION 53 1119 57 1119 51
STRAND 77 1119 82
COLOUR_TEXT_REGION 77 1119 82 1119 51
STRAND 87 1119 92
COLOUR_TEXT_REGION 87 1119 92 1119 51
STRAND 99 1119 104
COLOUR_TEXT_REGION 99 1119 104 1119 51