SILENT_MODE
BLOCK_FILE jp_j5rV40K.concise.blc
MAX_NSEQ 266
MAX_INPUT_LEN 268
OUTPUT_FILE jp_j5rV40K.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 85 255   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 256 85 265 H SPACE
SUB_CHARS 1 256 85 265 E SPACE
SUB_CHARS 1 256 85 265 - SPACE
STRAND 82 259 84
COLOUR_TEXT_REGION 82 259 84 259 51
HELIX 10 259 27
COLOUR_TEXT_REGION 10 259 27 259 50
HELIX 33 259 46
COLOUR_TEXT_REGION 33 259 46 259 50
HELIX 50 259 63
COLOUR_TEXT_REGION 50 259 63 259 50
HELIX 68 259 77
COLOUR_TEXT_REGION 68 259 77 259 50
HELIX 10 264 27
COLOUR_TEXT_REGION 10 264 27 264 50
HELIX 33 264 46
COLOUR_TEXT_REGION 33 264 46 264 50
HELIX 51 264 63
COLOUR_TEXT_REGION 51 264 63 264 50
HELIX 68 264 77
COLOUR_TEXT_REGION 68 264 77 264 50
STRAND 82 265 84
COLOUR_TEXT_REGION 82 265 84 265 51
HELIX 10 265 28
COLOUR_TEXT_REGION 10 265 28 265 50
HELIX 33 265 48
COLOUR_TEXT_REGION 33 265 48 265 50
HELIX 50 265 64
COLOUR_TEXT_REGION 50 265 64 265 50
HELIX 68 265 76
COLOUR_TEXT_REGION 68 265 76 265 50