SILENT_MODE BLOCK_FILE jp_y6saPgl.concise.blc MAX_NSEQ 351 MAX_INPUT_LEN 353 OUTPUT_FILE jp_y6saPgl.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 165 340 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 341 165 350 H SPACE SUB_CHARS 1 341 165 350 E SPACE SUB_CHARS 1 341 165 350 - SPACE STRAND 5 344 10 COLOUR_TEXT_REGION 5 344 10 344 51 STRAND 16 344 16 COLOUR_TEXT_REGION 16 344 16 344 51 STRAND 22 344 25 COLOUR_TEXT_REGION 22 344 25 344 51 STRAND 28 344 31 COLOUR_TEXT_REGION 28 344 31 344 51 STRAND 36 344 39 COLOUR_TEXT_REGION 36 344 39 344 51 STRAND 49 344 54 COLOUR_TEXT_REGION 49 344 54 344 51 STRAND 62 344 67 COLOUR_TEXT_REGION 62 344 67 344 51 STRAND 75 344 86 COLOUR_TEXT_REGION 75 344 86 344 51 STRAND 91 344 102 COLOUR_TEXT_REGION 91 344 102 344 51 STRAND 107 344 112 COLOUR_TEXT_REGION 107 344 112 344 51 HELIX 113 344 121 COLOUR_TEXT_REGION 113 344 121 344 50 HELIX 127 344 146 COLOUR_TEXT_REGION 127 344 146 344 50 HELIX 155 344 155 COLOUR_TEXT_REGION 155 344 155 344 50 STRAND 5 349 10 COLOUR_TEXT_REGION 5 349 10 349 51 STRAND 23 349 25 COLOUR_TEXT_REGION 23 349 25 349 51 STRAND 28 349 31 COLOUR_TEXT_REGION 28 349 31 349 51 STRAND 36 349 39 COLOUR_TEXT_REGION 36 349 39 349 51 STRAND 49 349 54 COLOUR_TEXT_REGION 49 349 54 349 51 STRAND 62 349 67 COLOUR_TEXT_REGION 62 349 67 349 51 STRAND 74 349 86 COLOUR_TEXT_REGION 74 349 86 349 51 STRAND 91 349 102 COLOUR_TEXT_REGION 91 349 102 349 51 STRAND 107 349 112 COLOUR_TEXT_REGION 107 349 112 349 51 HELIX 113 349 121 COLOUR_TEXT_REGION 113 349 121 349 50 HELIX 127 349 146 COLOUR_TEXT_REGION 127 349 146 349 50 STRAND 5 350 10 COLOUR_TEXT_REGION 5 350 10 350 51 STRAND 15 350 17 COLOUR_TEXT_REGION 15 350 17 350 51 STRAND 21 350 25 COLOUR_TEXT_REGION 21 350 25 350 51 STRAND 27 350 31 COLOUR_TEXT_REGION 27 350 31 350 51 STRAND 36 350 39 COLOUR_TEXT_REGION 36 350 39 350 51 STRAND 50 350 53 COLOUR_TEXT_REGION 50 350 53 350 51 STRAND 61 350 66 COLOUR_TEXT_REGION 61 350 66 350 51 STRAND 77 350 85 COLOUR_TEXT_REGION 77 350 85 350 51 STRAND 90 350 103 COLOUR_TEXT_REGION 90 350 103 350 51 STRAND 108 350 112 COLOUR_TEXT_REGION 108 350 112 350 51 HELIX 113 350 121 COLOUR_TEXT_REGION 113 350 121 350 50 HELIX 127 350 146 COLOUR_TEXT_REGION 127 350 146 350 50 HELIX 152 350 157 COLOUR_TEXT_REGION 152 350 157 350 50