Jpred secondary structure prediction results

QUERY                  : MRIKLIIVEGKTDESFFKVLLEKLYGFREAKKLTPEFPIGKWGFRIGEHPLVLEKDNIALVIIHAEGKQRIPKVLKSVLDSVKLGLLNVEEVYVVRDVDEGNDVFEWVLSFLREREVRVDNGAIVTEGVKIYPYGMGNLTLNEPFVKEKKELELSLAYLAKLDGILEKYRGSMRALSQDKGDKLTPKDVMHILSIANDYTGDCLSGLYEKYIGIMIHRNRELLIRFLSEVNLLPLLERMVG : QUERY 
UniRef90_UPI00029B38EC : -RTTVLFVEGKTDSKFFKGVFKKLFEFRESRIPPGNLRFIEKVFERDNFDLLKREDGVHLAIIPSEGNSGVIRNLGNFLRAMDVFGFNVDRIGVAVDIDEDESAIASIEGTLSGFDCKKTDHGYLVGETEVVPLFIGLPFRDELIDWKKPTVEDLMLHLLAKEGLLERIQPGLRALNENLGRKLKPKDVMYLALSAYGHWGN-LEGFYELFVMRSRFKNLKAILR---EAGLMAGLERLA- : UniRef90_UPI00029B38EC
UniRef90_Q5JFE4        : --VSVLFVEGKTDSKFFKAVMKKLFDFRESRTAPRNLKFIEKVFERDNFDL-LHKDGKYVAVIPSEGNSGVIRNLGNFLKAMDVFGFGVERIGVAIDVDEDREAMASITGKLASFSPRKAGDFYLVWNTFIVPLIIGLPFEDELIDWKKPTVEDLMLHLISAEGLLEKLRPALGAFEESLGRKLKPKEVMYLALSAYGHWGN-LEGFYELFVMRSRHRHIKDVLR---KAGLMEGLRFLA- : UniRef90_Q5JFE4
UniRef90_B6YSF4        : -RASVLFVEGKTDAKFFKAVFKKLFKFKESREVPANLKFIEGVFERENFEL-LRNENGFLAVIPSEGNSGVIRNLGNFIRAMEVFELSVDKIGVAIDVDDDREAMASITGKLSRFRPEKTATGFRVGKTEVIPLIIGLPFEDKLIEWKKPTVEDLMLHLIEREGLLERIRPALRTLNESLCRKLKPKEVMYLALSAYGHWGN-LEGFYELFVMRSRFRNLKAILR---EAGLMEGLFIISG : UniRef90_B6YSF4
UniRef90_UPI00029AF7E4 : MELRILLLEGKTDVNFFLPLVEH-YGFRENGEACKTLPFPRDS--DLSRPICLTKGETLLIVLHAGGKDKIKKALKVIFKALNRFDEQPTIIGVARDIDTEKDILNWAKSTLGMFEPEVEDGYLVVKGIKVVPFGIGEVLIDDKNIETKKELELLMAFLAKKESTISKLGGSIHKLSEDLRKKLTPKDIVHLLAIAKNYTGDSLSGLYRNFIEELIRENPEVVEEFLDESGLKMFLDVLAG : UniRef90_UPI00029AF7E4
UniRef90_F0LJ78        : -KVSIIFCEGKTDSKFFKGVYKKLFGFKESRTTPENLKLIEKVFERDNFEL-LRKDDVFLAIIPSEGNAGVIRNLGNFLKAMDVFEFKVDKIGLAIDIDESAEVMESIRGKLSSFKFTREGGNFRVGDVVIVPLLIG-YHFRHPCVWKKPTVEDLMLKLLEKQGVLRKIERAINILCIDLKRKLKPKEVIYLALASYGFWGN-LEGFYEMFVMRSRKKNLE---EILSAAGLLDKLAEVI- : UniRef90_F0LJ78
UniRef90_Q5JEB1        : METRLLLLEGRTDVSFFLPLIKELYGFKEAK--CEDLPVLEEGPKKLSRAICLSKDDTRLVVWHANGKDNLKNALKLIFKAIERLEDTPAIIGIARDVDTEESILNWAKSTLQSFEPDVKDGYLMINGIKVIPFGIGEVDFDARDIDLKKELELLMALLAKKESSLSKLEGSISQLRKDLGRKLTPKDIMHLLAIARNYGGDSMSGLYRNFIEKLIRENRELVEEFLNESGLKEFLNAIA- : UniRef90_Q5JEB1
UniRef90_C6A536        : -KVSVLFCEGKTDSKFFKASYKKVFGFKETKDLPPNLKLIETLFERDNYELIKNEDG-YIAIIPSEGNAGVIRNLENFLRAMEVFNFYVQKIGVAIDIDESEEVMQSIKGKLSSFRYKVSKKGFKVGSTEIIPLLIGTKIDLGPCVEWKPTVEDFMLAILEGDRTFKKLDRTINILCLDLKRKLKPKEVIYLAMAAKKFWGN-LEGFYEMSIMRTPKW---KVEKILKESRLYEKMESL-- : UniRef90_C6A536
UniRef90_H3ZND7        : MEVRLLLLEGRTDVSFFLPLIKEFYRFRESNAGCEILPFSKD--KELSRPICLIKYKTLLVILHANGKDNLKKALKAVFRAVERFEDRPTIIGVARDVDTEENILNWAKSTLQGFEPEVKNGYLLVNGITIVPFGIGDVTFDAKDIEPKKELELLMTLLAKKESNLSRLENSISQLSKDLERKLTPKDVMHLLAIARNYKGDSMSGLYRNFIEKLIRENRGLIEEFLDESGLRTFLETIA- : UniRef90_H3ZND7
UniRef90_Q60274        : --MRILLLEGITDVAFFIPILKKLYGFSE---ISCDGIIRAEKMGDISKPICLENEDVKLIVFHSGGKSKQKHALTAMLTAIKMGYLNIKILGIARDIDQEHDVKNWTKSIIKGFEVKEGDKFLIIENLKIAVLGIANYDEDDPSFELKRELEAVITDMAKEISIIEKFKNSLESLSNDAERRLKPKDITHVLAIAKNFDGDSMSGLYRKFIEEQIN-NKNKVNFLLTLICILPCL----- : UniRef90_Q60274
UniRef90_F4HLQ5        : MRVKVLIVEGKTDEAFFKALLENLYGFKRNDALIAKIPIGRHRPREVAHPLVLAKDDLAIVVQRAEGKQRIPKIVKHLINSMNLGILELDGIFVVRDLDRESDVSNWI------------------EGVRIY--GMGKVSLGYENVEERRELELSIAYLAKLDGILDRYSRSISALREDKGEKLTPKDLMHLLSIAERYGGDCLSGLYEKYIGIMAHRNRELLLRF--------------- : UniRef90_F4HLQ5

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221-------231------- :
OrigSeq                : MRIKLIIVEGKTDESFFKVLLEKLYGFREAKKLTPEFPIGKWGFRIGEHPLVLEKDNIALVIIHAEGKQRIPKVLKSVLDSVKLGLLNVEEVYVVRDVDEGNDVFEWVLSFLREREVRVDNGAIVTEGVKIYPYGMGNLTLNEPFVKEKKELELSLAYLAKLDGILEKYRGSMRALSQDKGDKLTPKDVMHILSIANDYTGDCLSGLYEKYIGIMIHRNRELLIRFLSEVNLLPLLERMVG : OrigSeq

Jnet                   : --EEEEEEE------HHHHHHHHHH-----------------------HHHHH----EEEEEEE------HHHHHHHHHHHHHH----EEEEEEEEEE----HHHHHHHHHH---EEEE---EEEEEEEEEEEEE--------------HHHHHHHHHHHHH--HHHHHHHHHHHHHHHH------HHHHHHHHHH------HHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHH-- : Jnet
jhmm                   : -EEEEEEEE-------HHHHHHHHH-----------------------HHHHE----EEEEEEE------HHHHHHHHHHHHHH----EEEEEEEEE-----HHHHHHHHHH---EEEE---EEEEEEEEEEEEE--------------HHHHHHHHHHHHH--HHHHHHHHHHHHHHH--------HHHHHHHHH------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-- : jhmm
jpssm                  : --EEEEEE----HHHHHHHHHHHHHH----------------------HHHHH----EEEEEEE------HHHHHHHHHHHHHH---EEEEEEEEEEE---HHHHHHHHHHH----EEE---EEEEE-EEEEEEE--------------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-----HHHHHHHHHH------HHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHH-- : jpssm

Lupas 14               : ---------------------------------------------------------------------------------------------------------------------------------------------------------------------cccccccccccccc-------------------------------------------------------------- : Lupas 14
Lupas 21               : --------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCCCCCCCCCCCCCCCCCC-------------------------------------------------------------- : Lupas 21
Lupas 28               : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : --B-BBBBBB-B---BBBBBB--BB-B-----BB--B-B---BB----B-BBB----BBBBBBBB-B---B--BB-BBB-BB-BB-B-B--BBBBBBB-----BB-BB-B-B--B-B-----BBBB--B-BBBBBBBBB-----BB-----BBBBBBBBB---BBB--B--BB--B---B---B-B--BBBBBBBB--B-B-BBBBBB--BB--BB--BB-BBB-BB--B-BB-BB--B-- : Jnet_25
Jnet_5                 : ----BBBB--------B--BB--B------------B-------------BB-------BBBB-------B---B--BB-BB--B------B-BB------------B---B-------------B----BBBBBBB--------------B--BB--BB-----B--B---B--B------------BBBBBB-B-------B--BB---B----------B--BB----B---B----- : Jnet_5
Jnet_0                 : ----B----------------------------------------------B-------BBB-------------------------------B-------------B-------------------------------------------B--BB--B-----------------------------B--BB------------B----------------B--------B--------- : Jnet_0
Jnet Rel               : 9268998407864112999999985124567777764145345676633442137854899874478874278999999998744873127888998158217889999885167136537617871358999851677777776652138999999999861367776324589999832588741899999885278874589999999999986146899999985011899987279 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.