SILENT_MODE
BLOCK_FILE jp_weaYJNw.concise.blc
MAX_NSEQ 101
MAX_INPUT_LEN 103
OUTPUT_FILE jp_weaYJNw.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 97 90   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 91 97 100 H SPACE
SUB_CHARS 1 91 97 100 E SPACE
SUB_CHARS 1 91 97 100 - SPACE
HELIX 4 94 24
COLOUR_TEXT_REGION 4 94 24 94 50
HELIX 32 94 46
COLOUR_TEXT_REGION 32 94 46 94 50
HELIX 52 94 63
COLOUR_TEXT_REGION 52 94 63 94 50
HELIX 72 94 95
COLOUR_TEXT_REGION 72 94 95 94 50
HELIX 4 99 25
COLOUR_TEXT_REGION 4 99 25 99 50
HELIX 33 99 46
COLOUR_TEXT_REGION 33 99 46 99 50
HELIX 52 99 63
COLOUR_TEXT_REGION 52 99 63 99 50
HELIX 72 99 95
COLOUR_TEXT_REGION 72 99 95 99 50
HELIX 4 100 23
COLOUR_TEXT_REGION 4 100 23 100 50
HELIX 32 100 47
COLOUR_TEXT_REGION 32 100 47 100 50
HELIX 52 100 63
COLOUR_TEXT_REGION 52 100 63 100 50
HELIX 74 100 85
COLOUR_TEXT_REGION 74 100 85 100 50
HELIX 88 100 95
COLOUR_TEXT_REGION 88 100 95 100 50