SILENT_MODE BLOCK_FILE jp_UgOTKdy.concise.blc MAX_NSEQ 1011 MAX_INPUT_LEN 1013 OUTPUT_FILE jp_UgOTKdy.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 263 1000 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1001 263 1010 H SPACE SUB_CHARS 1 1001 263 1010 E SPACE SUB_CHARS 1 1001 263 1010 - SPACE STRAND 20 1004 26 COLOUR_TEXT_REGION 20 1004 26 1004 51 STRAND 31 1004 35 COLOUR_TEXT_REGION 31 1004 35 1004 51 STRAND 69 1004 72 COLOUR_TEXT_REGION 69 1004 72 1004 51 STRAND 84 1004 86 COLOUR_TEXT_REGION 84 1004 86 1004 51 STRAND 205 1004 209 COLOUR_TEXT_REGION 205 1004 209 1004 51 STRAND 218 1004 225 COLOUR_TEXT_REGION 218 1004 225 1004 51 STRAND 231 1004 238 COLOUR_TEXT_REGION 231 1004 238 1004 51 HELIX 3 1004 15 COLOUR_TEXT_REGION 3 1004 15 1004 50 HELIX 45 1004 60 COLOUR_TEXT_REGION 45 1004 60 1004 50 HELIX 93 1004 104 COLOUR_TEXT_REGION 93 1004 104 1004 50 HELIX 108 1004 116 COLOUR_TEXT_REGION 108 1004 116 1004 50 HELIX 121 1004 134 COLOUR_TEXT_REGION 121 1004 134 1004 50 HELIX 157 1004 169 COLOUR_TEXT_REGION 157 1004 169 1004 50 HELIX 177 1004 185 COLOUR_TEXT_REGION 177 1004 185 1004 50 HELIX 245 1004 262 COLOUR_TEXT_REGION 245 1004 262 1004 50 STRAND 20 1009 26 COLOUR_TEXT_REGION 20 1009 26 1009 51 STRAND 31 1009 35 COLOUR_TEXT_REGION 31 1009 35 1009 51 STRAND 69 1009 72 COLOUR_TEXT_REGION 69 1009 72 1009 51 STRAND 84 1009 86 COLOUR_TEXT_REGION 84 1009 86 1009 51 STRAND 205 1009 210 COLOUR_TEXT_REGION 205 1009 210 1009 51 STRAND 219 1009 225 COLOUR_TEXT_REGION 219 1009 225 1009 51 STRAND 231 1009 237 COLOUR_TEXT_REGION 231 1009 237 1009 51 HELIX 3 1009 15 COLOUR_TEXT_REGION 3 1009 15 1009 50 HELIX 45 1009 60 COLOUR_TEXT_REGION 45 1009 60 1009 50 HELIX 92 1009 104 COLOUR_TEXT_REGION 92 1009 104 1009 50 HELIX 108 1009 116 COLOUR_TEXT_REGION 108 1009 116 1009 50 HELIX 121 1009 135 COLOUR_TEXT_REGION 121 1009 135 1009 50 HELIX 156 1009 170 COLOUR_TEXT_REGION 156 1009 170 1009 50 HELIX 177 1009 183 COLOUR_TEXT_REGION 177 1009 183 1009 50 HELIX 245 1009 262 COLOUR_TEXT_REGION 245 1009 262 1009 50 STRAND 20 1010 26 COLOUR_TEXT_REGION 20 1010 26 1010 51 STRAND 31 1010 35 COLOUR_TEXT_REGION 31 1010 35 1010 51 STRAND 41 1010 42 COLOUR_TEXT_REGION 41 1010 42 1010 51 STRAND 68 1010 74 COLOUR_TEXT_REGION 68 1010 74 1010 51 STRAND 204 1010 208 COLOUR_TEXT_REGION 204 1010 208 1010 51 STRAND 218 1010 225 COLOUR_TEXT_REGION 218 1010 225 1010 51 STRAND 231 1010 238 COLOUR_TEXT_REGION 231 1010 238 1010 51 HELIX 3 1010 15 COLOUR_TEXT_REGION 3 1010 15 1010 50 HELIX 46 1010 59 COLOUR_TEXT_REGION 46 1010 59 1010 50 HELIX 93 1010 104 COLOUR_TEXT_REGION 93 1010 104 1010 50 HELIX 108 1010 116 COLOUR_TEXT_REGION 108 1010 116 1010 50 HELIX 121 1010 129 COLOUR_TEXT_REGION 121 1010 129 1010 50 HELIX 158 1010 169 COLOUR_TEXT_REGION 158 1010 169 1010 50 HELIX 176 1010 186 COLOUR_TEXT_REGION 176 1010 186 1010 50 HELIX 245 1010 261 COLOUR_TEXT_REGION 245 1010 261 1010 50