SILENT_MODE BLOCK_FILE jp_9Sdkmow.concise.blc MAX_NSEQ 282 MAX_INPUT_LEN 284 OUTPUT_FILE jp_9Sdkmow.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 117 271 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 272 117 281 H SPACE SUB_CHARS 1 272 117 281 E SPACE SUB_CHARS 1 272 117 281 - SPACE STRAND 13 275 18 COLOUR_TEXT_REGION 13 275 18 275 51 STRAND 42 275 46 COLOUR_TEXT_REGION 42 275 46 275 51 STRAND 60 275 64 COLOUR_TEXT_REGION 60 275 64 275 51 STRAND 84 275 88 COLOUR_TEXT_REGION 84 275 88 275 51 HELIX 23 275 37 COLOUR_TEXT_REGION 23 275 37 275 50 HELIX 69 275 79 COLOUR_TEXT_REGION 69 275 79 275 50 HELIX 94 275 102 COLOUR_TEXT_REGION 94 275 102 275 50 STRAND 14 280 18 COLOUR_TEXT_REGION 14 280 18 280 51 STRAND 42 280 44 COLOUR_TEXT_REGION 42 280 44 280 51 STRAND 60 280 64 COLOUR_TEXT_REGION 60 280 64 280 51 STRAND 84 280 87 COLOUR_TEXT_REGION 84 280 87 280 51 HELIX 24 280 37 COLOUR_TEXT_REGION 24 280 37 280 50 HELIX 69 280 79 COLOUR_TEXT_REGION 69 280 79 280 50 HELIX 94 280 102 COLOUR_TEXT_REGION 94 280 102 280 50 STRAND 13 281 18 COLOUR_TEXT_REGION 13 281 18 281 51 STRAND 43 281 48 COLOUR_TEXT_REGION 43 281 48 281 51 STRAND 59 281 63 COLOUR_TEXT_REGION 59 281 63 281 51 STRAND 84 281 88 COLOUR_TEXT_REGION 84 281 88 281 51 HELIX 23 281 37 COLOUR_TEXT_REGION 23 281 37 281 50 HELIX 69 281 79 COLOUR_TEXT_REGION 69 281 79 281 50 HELIX 95 281 102 COLOUR_TEXT_REGION 95 281 102 281 50