QUERY : PRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVNHARR : QUERY
UniRef90_UPI0003C16091 : PRLLQYKLRSSAQDQEERRRRLLEFQKSKRLDYVNHARR : UniRef90_UPI0003C16091
UniRef90_W5U853 : PRLAQYKSKYSALDQDERRRKFLQEQKEKRLNYVNHARR : UniRef90_W5U853
UniRef90_B5X3K0 : PRMAQYKTKFSVLEQSERRRRFLDLQKTKRLNYVNHARR : UniRef90_B5X3K0
UniRef90_A0A023FI63 : PRFSSYKLKYSASSQEERRRKFFEDQKKKRCDFIQHARR : UniRef90_A0A023FI63
UniRef90_G1NSD8 : PRLCNFDQQFSALGKEERREKGLQLAINKRLDYVNHARR : UniRef90_G1NSD8
UniRef90_V9KKB2 : PRLAQYKARHGGQDQAERRRQLLQSQKSRRLNYVNHAR- : UniRef90_V9KKB2
UniRef90_G1QE03 : PRLLEVSTKFTIDKQEERREKGLQLAINKRLDYVNHARR : UniRef90_G1QE03
UniRef90_T1HKK1 : PRYAQYKAKHSNSSQEERRRQWLQNQKEKRLKLFNIHR- : UniRef90_T1HKK1
UniRef90_UPI000359E1D6 : PRYSQYKMKSTKQDQESRRSRLLEFQKSRRFDSMNHVRK : UniRef90_UPI000359E1D6
UniRef90_A0A044RAL6 : PRFSQYKYIGRALSQERRRKEFLRRQKEARFDYANHARK : UniRef90_A0A044RAL6
UniRef90_G3QPJ6 : PRLSQYKSKYSSLEQSERRRRLLELQKTDFRFYWMHSK- : UniRef90_G3QPJ6
UniRef90_B7PK22 : PRFASYKVKYSASSQSERRREFIEKQKQRRFDFQQHAR- : UniRef90_B7PK22
UniRef90_C3YQ40 : PRLAQYKAKSHDLAQSERRRQMLDRQKKQRQDVANLARR : UniRef90_C3YQ40
UniRef90_V4A4B2 : PRFAQYKCKSSTPSQDKRRQRILESQKKRRFDFQGHVR- : UniRef90_V4A4B2
UniRef90_E9H1R9 : PRFSQFK-KTSKTSQEVRRRRTLENQKQSRYDYYNHCR- : UniRef90_E9H1R9
UniRef90_X2G8X1 : PRFAMYKMKNSGSNQEQRRQRLLEHQKGKRDDLINHAR- : UniRef90_X2G8X1
UniRef90_UPI0002651CC5 : PRMCMYKTRESKQSQWERRKEKLRLQREQRRNYADIGRK : UniRef90_UPI0002651CC5
UniRef90_K1P122 : PRFAQYKCK-TKVDQETRRKRILEEQKKQRFDFLKHVR- : UniRef90_K1P122
UniRef90_UPI0003340C66 : PRLSQYKSKYSSLEQSERRRRLLELQKLTQL-------- : UniRef90_UPI0003340C66
UniRef90_T1ILI8 : PRFSQYKLKHKNADQTARRKRLLEEQKLQRYKYVNNKR- : UniRef90_T1ILI8
UniRef90_T2MID7 : PRLGEYKGRFFKSEQQNRRREYLEQQKKNRFDAVSYARK : UniRef90_T2MID7
UniRef90_UPI0003F079BA : PRLLQYKLKSSAVDQEERRRRKLEQQKQ----------- : UniRef90_UPI0003F079BA
UniRef90_T1JE87 : PRFSQYKVK-QKNDQSTRRERLLEEQKQQRDKYVNSKR- : UniRef90_T1JE87
UniRef90_Q4SLT2 : PRLAQYKCKYSALEQSERRRHFLELQK------------ : UniRef90_Q4SLT2
UniRef90_A7SYQ6 : PRIGNYKVKHNVPDQHVRRERKLEQQKKKRMDFVNYSRK : UniRef90_A7SYQ6
UniRef90_UPI000180D0DC : PRFDLYKQRTSEADQNVRRQNKLKQQKERRCNFQNHAR- : UniRef90_UPI000180D0DC
UniRef90_W2T7Z3 : PRFSKFKNAGRAAEQQKRREDAMERQRNSRFDHFNHTRK : UniRef90_W2T7Z3
UniRef90_F4P7B0 : -RISQYKFQPS-LSQDVRRQRALEFQKKRRLQQVDAARK : UniRef90_F4P7B0
UniRef90_E9C9Y2 : -RQAQYKAGRQPATQAERRKKLLDRQKERRHELVDFARR : UniRef90_E9C9Y2
UniRef90_V5HGC4 : PRFASYKVKYSASSQSERRREFIEKTKT----------- : UniRef90_V5HGC4
UniRef90_UPI0003D081C1 : PRLAQHKAPPGGPQQDERRLRLLRLQKAKRLDYVNHARR : UniRef90_UPI0003D081C1
UniRef90_O17066 : PRYSQYKNLTKAAEQQKRREETLERQKNGRFDTFMKLR- : UniRef90_O17066
: 1---------11--------21--------31------- :
OrigSeq : PRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVNHARR : OrigSeq
Jnet : --------------HHHHHHHHHHHHHHHHHHHHHH--- : Jnet
jhmm : --------------HHHHHHHHHHHHHHHHHHHHHH--- : jhmm
jpssm : --------------HHHHHHHHHHHHHHHHHHHHHH--- : jpssm
Lupas 14 : --cccccccccccccc----------------------- : Lupas 14
Lupas 21 : --------------------------------------- : Lupas 21
Lupas 28 : --------------------------------------- : Lupas 28
Jnet_25 : ---B-B-----------BB--BB--B---BB-BB----- : Jnet_25
Jnet_5 : ----------------------B---------------- : Jnet_5
Jnet_0 : --------------------------------------- : Jnet_0
Jnet Rel : 998876533567646899999999999999999875289 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.