SILENT_MODE BLOCK_FILE jp_oJ_BfQN.concise.blc MAX_NSEQ 70 MAX_INPUT_LEN 72 OUTPUT_FILE jp_oJ_BfQN.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 117 59 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 60 117 69 H SPACE SUB_CHARS 1 60 117 69 E SPACE SUB_CHARS 1 60 117 69 - SPACE STRAND 6 63 10 COLOUR_TEXT_REGION 6 63 10 63 51 STRAND 16 63 21 COLOUR_TEXT_REGION 16 63 21 63 51 STRAND 43 63 49 COLOUR_TEXT_REGION 43 63 49 63 51 STRAND 52 63 55 COLOUR_TEXT_REGION 52 63 55 63 51 STRAND 81 63 86 COLOUR_TEXT_REGION 81 63 86 63 51 HELIX 28 63 38 COLOUR_TEXT_REGION 28 63 38 63 50 HELIX 65 63 74 COLOUR_TEXT_REGION 65 63 74 63 50 HELIX 90 63 104 COLOUR_TEXT_REGION 90 63 104 63 50 HELIX 110 63 115 COLOUR_TEXT_REGION 110 63 115 63 50 STRAND 6 68 10 COLOUR_TEXT_REGION 6 68 10 68 51 STRAND 16 68 21 COLOUR_TEXT_REGION 16 68 21 68 51 STRAND 43 68 49 COLOUR_TEXT_REGION 43 68 49 68 51 STRAND 52 68 55 COLOUR_TEXT_REGION 52 68 55 68 51 STRAND 81 68 86 COLOUR_TEXT_REGION 81 68 86 68 51 HELIX 28 68 38 COLOUR_TEXT_REGION 28 68 38 68 50 HELIX 67 68 73 COLOUR_TEXT_REGION 67 68 73 68 50 HELIX 90 68 104 COLOUR_TEXT_REGION 90 68 104 68 50 HELIX 110 68 115 COLOUR_TEXT_REGION 110 68 115 68 50 STRAND 6 69 10 COLOUR_TEXT_REGION 6 69 10 69 51 STRAND 16 69 21 COLOUR_TEXT_REGION 16 69 21 69 51 STRAND 43 69 48 COLOUR_TEXT_REGION 43 69 48 69 51 STRAND 52 69 55 COLOUR_TEXT_REGION 52 69 55 69 51 STRAND 81 69 85 COLOUR_TEXT_REGION 81 69 85 69 51 HELIX 28 69 38 COLOUR_TEXT_REGION 28 69 38 69 50 HELIX 64 69 74 COLOUR_TEXT_REGION 64 69 74 69 50 HELIX 90 69 103 COLOUR_TEXT_REGION 90 69 103 69 50 HELIX 110 69 114 COLOUR_TEXT_REGION 110 69 114 69 50