SILENT_MODE
BLOCK_FILE jp_JBzbIin.concise.blc
MAX_NSEQ 59
MAX_INPUT_LEN 61
OUTPUT_FILE jp_JBzbIin.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 228 48   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 49 228 58 H SPACE
SUB_CHARS 1 49 228 58 E SPACE
SUB_CHARS 1 49 228 58 - SPACE
STRAND 3 52 12
COLOUR_TEXT_REGION 3 52 12 52 51
STRAND 42 52 42
COLOUR_TEXT_REGION 42 52 42 52 51
STRAND 49 52 58
COLOUR_TEXT_REGION 49 52 58 52 51
STRAND 64 52 69
COLOUR_TEXT_REGION 64 52 69 52 51
STRAND 132 52 136
COLOUR_TEXT_REGION 132 52 136 52 51
STRAND 142 52 148
COLOUR_TEXT_REGION 142 52 148 52 51
HELIX 25 52 30
COLOUR_TEXT_REGION 25 52 30 52 50
HELIX 73 52 82
COLOUR_TEXT_REGION 73 52 82 52 50
HELIX 86 52 88
COLOUR_TEXT_REGION 86 52 88 52 50
HELIX 99 52 108
COLOUR_TEXT_REGION 99 52 108 52 50
HELIX 110 52 113
COLOUR_TEXT_REGION 110 52 113 52 50
HELIX 130 52 131
COLOUR_TEXT_REGION 130 52 131 52 50
HELIX 152 52 157
COLOUR_TEXT_REGION 152 52 157 52 50
HELIX 164 52 175
COLOUR_TEXT_REGION 164 52 175 52 50
HELIX 191 52 217
COLOUR_TEXT_REGION 191 52 217 52 50
STRAND 3 57 5
COLOUR_TEXT_REGION 3 57 5 57 51
STRAND 8 57 12
COLOUR_TEXT_REGION 8 57 12 57 51
STRAND 40 57 42
COLOUR_TEXT_REGION 40 57 42 57 51
STRAND 50 57 57
COLOUR_TEXT_REGION 50 57 57 57 51
STRAND 64 57 70
COLOUR_TEXT_REGION 64 57 70 57 51
STRAND 132 57 137
COLOUR_TEXT_REGION 132 57 137 57 51
STRAND 142 57 148
COLOUR_TEXT_REGION 142 57 148 57 51
HELIX 25 57 30
COLOUR_TEXT_REGION 25 57 30 57 50
HELIX 73 57 82
COLOUR_TEXT_REGION 73 57 82 57 50
HELIX 86 57 88
COLOUR_TEXT_REGION 86 57 88 57 50
HELIX 99 57 113
COLOUR_TEXT_REGION 99 57 113 57 50
HELIX 152 57 157
COLOUR_TEXT_REGION 152 57 157 57 50
HELIX 164 57 174
COLOUR_TEXT_REGION 164 57 174 57 50
HELIX 191 57 202
COLOUR_TEXT_REGION 191 57 202 57 50
HELIX 204 57 205
COLOUR_TEXT_REGION 204 57 205 57 50
HELIX 207 57 217
COLOUR_TEXT_REGION 207 57 217 57 50
STRAND 3 58 12
COLOUR_TEXT_REGION 3 58 12 58 51
STRAND 42 58 43
COLOUR_TEXT_REGION 42 58 43 58 51
STRAND 49 58 58
COLOUR_TEXT_REGION 49 58 58 58 51
STRAND 64 58 69
COLOUR_TEXT_REGION 64 58 69 58 51
STRAND 142 58 148
COLOUR_TEXT_REGION 142 58 148 58 51
HELIX 25 58 30
COLOUR_TEXT_REGION 25 58 30 58 50
HELIX 72 58 81
COLOUR_TEXT_REGION 72 58 81 58 50
HELIX 86 58 88
COLOUR_TEXT_REGION 86 58 88 58 50
HELIX 100 58 105
COLOUR_TEXT_REGION 100 58 105 58 50
HELIX 130 58 136
COLOUR_TEXT_REGION 130 58 136 58 50
HELIX 152 58 157
COLOUR_TEXT_REGION 152 58 157 58 50
HELIX 164 58 175
COLOUR_TEXT_REGION 164 58 175 58 50
HELIX 192 58 217
COLOUR_TEXT_REGION 192 58 217 58 50