Filename Description -------- ----------- jp_hiUZhEb.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp_hiUZhEb.als Alscript command file. Used to generate PS/PDF outputjp_hiUZhEb.blast.gz PSIBLAST output (compressed) jp_hiUZhEb.coils.csv The output from coils in CSV format jp_hiUZhEb.coilseq.lupas_14 The output from coils using a window length of 14 jp_hiUZhEb.coilseq.lupas_21 The output from coils using a window length of 21 jp_hiUZhEb.coilseq.lupas_28 The output from coils using a window length of 28 jp_hiUZhEb.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp_hiUZhEb.concise.blc A BLC file of the prediction and alignment jp_hiUZhEb.concise.pdf A PDF file of the prediction and alignment jp_hiUZhEb.fasta Input query sequence in FASTA format jp_hiUZhEb.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp_hiUZhEb.hmm The HHMer2 profile of the alignment jp_hiUZhEb.html A HTML file of the prediction and alignment jp_hiUZhEb.input Your raw input jp_hiUZhEb.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp_hiUZhEb.jnet The output from Jnet jp_hiUZhEb.profile PSIBLAST profile jp_hiUZhEb.pssm PSIBLAST PSSM in a format for Jnet jp_hiUZhEb.seq Your sequence jp_hiUZhEb.simple.html The brief HTML output of the query sequence and prediction only jp_hiUZhEb.svg.html A Jalview generated SVG file with summary of the results.