SILENT_MODE
BLOCK_FILE jp_ii9gGIj.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_ii9gGIj.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 94 26   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 27 94 36 H SPACE
SUB_CHARS 1 27 94 36 E SPACE
SUB_CHARS 1 27 94 36 - SPACE
STRAND 29 30 32
COLOUR_TEXT_REGION 29 30 32 30 51
STRAND 56 30 57
COLOUR_TEXT_REGION 56 30 57 30 51
STRAND 61 30 66
COLOUR_TEXT_REGION 61 30 66 30 51
STRAND 72 30 75
COLOUR_TEXT_REGION 72 30 75 30 51
STRAND 89 30 92
COLOUR_TEXT_REGION 89 30 92 30 51
HELIX 4 30 22
COLOUR_TEXT_REGION 4 30 22 30 50
HELIX 34 30 47
COLOUR_TEXT_REGION 34 30 47 30 50
HELIX 78 30 84
COLOUR_TEXT_REGION 78 30 84 30 50
STRAND 29 35 32
COLOUR_TEXT_REGION 29 35 32 35 51
STRAND 55 35 64
COLOUR_TEXT_REGION 55 35 64 35 51
STRAND 72 35 75
COLOUR_TEXT_REGION 72 35 75 35 51
STRAND 88 35 92
COLOUR_TEXT_REGION 88 35 92 35 51
HELIX 5 35 22
COLOUR_TEXT_REGION 5 35 22 35 50
HELIX 34 35 47
COLOUR_TEXT_REGION 34 35 47 35 50
HELIX 65 35 66
COLOUR_TEXT_REGION 65 35 66 35 50
HELIX 78 35 82
COLOUR_TEXT_REGION 78 35 82 35 50
STRAND 29 36 32
COLOUR_TEXT_REGION 29 36 32 36 51
STRAND 61 36 66
COLOUR_TEXT_REGION 61 36 66 36 51
STRAND 72 36 75
COLOUR_TEXT_REGION 72 36 75 36 51
STRAND 89 36 92
COLOUR_TEXT_REGION 89 36 92 36 51
HELIX 4 36 22
COLOUR_TEXT_REGION 4 36 22 36 50
HELIX 34 36 46
COLOUR_TEXT_REGION 34 36 46 36 50
HELIX 76 36 85
COLOUR_TEXT_REGION 76 36 85 36 50