QUERY                  : STRGDLIRILGEIEEKMNELKMDGFNPDIILFGREAYNFLSNLLKKEMEEEGPFTHVSNIKIEILEELGGDAVVIDSKVLGLVPGAAKRIKIIK : QUERY 
UniRef90_I3RE21        : TARGDLIRILGEIEEKVNELKMEGFDPDVVLFGRDAYNFFSRILKQETNEEGPITEVSGLKIDVVSYLGGDAVVIDSKMLGLAPGAAKRIRVIR : UniRef90_I3RE21
UniRef90_O74008        : STRGDLIRILSDIEEKINELKMDGYRPDVILFGKEAYNFFSSIVKVETGEEGPFTEVSNLRVEILSELGKDAVIIDSKLLGLSPGAAKRIRIIK : UniRef90_O74008
UniRef90_F0LMI5        : --RGDLIRILSAVEEKANELKMDGFEPDIVLFGKEAYEFLKAQVDEEFGEDERITEVSGLKVRVLEELGRDAVVIDSKMLGIGLGGARRIRIIK : UniRef90_F0LMI5
UniRef90_C5A5Q4        : --RGDLIRVLSDIEEKANELKLDGYEPDVVLVGLEAYEFIKEQVKEEFGGDEEILELSGLKIRLLEELGGDAVVIDTKALGYAP-AAKRLRIVQ : UniRef90_C5A5Q4
UniRef90_C6A2H1        : --RGELIRILGSVEEKANELKLDGFEPDVVLFGKEAYEFLKNQVNQEFGGEDSVSEISGLSIRVVDEFGKDAVVVDSKVLGLGLGGAKRLKVIK : UniRef90_C6A2H1
UniRef90_F8AI40        : NVRGELIRVLSAVEEKANELKMDGFEPDVVLFGREAYNFLSSLVKSELGGEELPTELSGLKIVILDELRGYAVVIDSKALGFALGAARRIRIV- : UniRef90_F8AI40
UniRef90_B6YXG5        : --RGDLIRVLSLIEEKANELKLDGYEPDVVLVGFEAYEFIKGQVNEEFGGEEEVLELSGLKLRILDELGKDAVVVDSKVLGFGLGGAKRFRVLE : UniRef90_B6YXG5
UniRef90_UPI00029A2E57 : --RGELIRVLSEIEEKANELKLDGYNPDVVITGREAYEFVKTLVNEEFGGDEELLELSGLKVRVVDELGGDALIMDSQAAGYEARAIRRIKVVR : UniRef90_UPI00029A2E57
UniRef90_I3RGH0        : -------QLIDLITAAINELKEDGLEPDIMLVGPEFKNYIT----------PDILAIINLKIYEIKELGADAVIADSKYLGQLKKASKRISI-- : UniRef90_I3RGH0
UniRef90_F4HK35        : -----IVSLIELLNTTINELKREGVEPDIILVGPEFKRYLN----------EEVLNMIKMKVYVIEELGSDAVIADSRYLGQLKKASRRISI-- : UniRef90_F4HK35
UniRef90_F0LIR3        : --------IYELVKTTINELREEGLNPDIMLAGPEFLKHASEVLKE-----------CHLAVYEIKELNSDAVIADSQYLGQLKRASRRISI-- : UniRef90_F0LIR3
UniRef90_O59495        : ------LHIIDLLTSTISELKEEGFEPDLILVGPEFKKYLS----------EEMIGMLKMKVYYIEELGSDAIIADSKYLGQLKKASKRISI-- : UniRef90_O59495
UniRef90_Q5JEV9        : --------ILEVIERIIGELRSEGMNPNIMLAGPQFIEYSKDALKQ-----------INLKIYRIEELGYDAVIADSNYLGQIKKASRRVSV-- : UniRef90_Q5JEV9
UniRef90_G0HL23        : --------VRDLLNKAIRELREEGLEPDILLVGPHFIEYAVEQLRE-----------CRFKIYKIDELGYDAVVADSSYLGQVKRASRRISV-- : UniRef90_G0HL23
UniRef90_P61996        : -------QVKEIIEAAIKELEDDGFEPDIILAGPIFIRYLPEDVR--------------LKVYEIEELGSDAIIADSKYLGQIKKAAKRISI-- : UniRef90_P61996
UniRef90_Q9V1P0        : --------VMDILNAAINELKAEGIEPDIILVGPEFGKFLN----------ESMLKMLKMKVYYIEELGSDAIVADSKYLGQLRKAAKRISI-- : UniRef90_Q9V1P0
UniRef90_W8PN48        : ----------EVVLRAIEELKNDGMNPDVMLAGPGFIEHSK-----------DFLTGLGLKIYRIEELGYDAVIADSAYLGQIKKASRRISV-- : UniRef90_W8PN48
UniRef90_B6YUB2        : --------IKDILDRAIQELRVEGLEPDILLVGPGFLEYTIQVLRE-----------CKLKIYKIDELGYDAVVADSKYLGQIKRASRRISV-- : UniRef90_B6YUB2
UniRef90_UPI00029A3886 : --------VLEIIERAAQELREEGLTPDILLAGQEFMKHASGAVD-----------GLGLSVYVVKELEFDAVIADSRYLGQMRKASKRISI-- : UniRef90_UPI00029A3886
UniRef90_F8AFI2        : -----LDQLIELINTAIRELEEEGLSPDILLAGSEFLKY-----------SLDIIEGLSLSVYEIKELGNDAIIADSKYIGQLKKASRRISI-- : UniRef90_F8AFI2
UniRef90_C5A367        : --------MLELIERASQELREEGVNPDILLAGPGFVEVM-----------GELLDVLDLPVYVIKELEYDAVIADSRYLGQVRKASKRISI-- : UniRef90_C5A367
UniRef90_H3ZK19        : ---------LELLRTVIKEIREDGFEPKVALVGPKFAEKAAKELKT-----------LGLNVYVIKELNCDAIIADPRFLGHLRKASRRISL-- : UniRef90_H3ZK19

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91-- :
OrigSeq                : STRGDLIRILGEIEEKMNELKMDGFNPDIILFGREAYNFLSNLLKKEMEEEGPFTHVSNIKIEILEELGGDAVVIDSKVLGLVPGAAKRIKIIK : OrigSeq

Jnet                   : ---HHHHHHHHHHHHHHHHHHH------EEEE-HHHHHHHHHHHHHH--------EE---EEEEEE-----EEEE--HHHHHHH----EEEE-- : Jnet
jhmm                   : ----HHHHHHHHHHHHHHHHHH------EEEE-HHHHHHHHHHHHHH-------EEEEEEEEEEHH-----EEEE--HHHHH-----EEEEE-- : jhmm
jpssm                  : ---HHHHHHHHHHHHHHHHHHH------EEEE-HHHHHHHHHHHHH--------------EEEEEE-----EEEEHHHHHHHHHH---EEEE-- : jpssm

Lupas 14               : ---------cccccccccccccc----------------------------------------------------------------------- : Lupas 14
Lupas 21               : --ccccccccccccccccccccc----------------------------------------------------------------------- : Lupas 21
Lupas 28               : ---------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : ---B-BB-BB--B--BB--B---BB-B-BBBBB--BB-BB---B---------BB-BB-B-B-BB--B---BBBBBB-BBB-B--B--BB-B-- : Jnet_25
Jnet_5                 : -----B--B---B---B--B--------BBBBB--B---B---B-------------B-B-B--B------BBBBB--B----------B-B-- : Jnet_5
Jnet_0                 : ----------------------------B-----------------------------------B--------BB------------------- : Jnet_0
Jnet Rel               : 9941889999999999999885268884243244899999999874257777521101115888421688547733267765213130267548 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.