SILENT_MODE
BLOCK_FILE jp_ND0iReh.concise.blc
MAX_NSEQ 164
MAX_INPUT_LEN 166
OUTPUT_FILE jp_ND0iReh.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 75 153   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 154 75 163 H SPACE
SUB_CHARS 1 154 75 163 E SPACE
SUB_CHARS 1 154 75 163 - SPACE
HELIX 2 157 19
COLOUR_TEXT_REGION 2 157 19 157 50
HELIX 27 157 47
COLOUR_TEXT_REGION 27 157 47 157 50
HELIX 51 157 71
COLOUR_TEXT_REGION 51 157 71 157 50
HELIX 2 162 19
COLOUR_TEXT_REGION 2 162 19 162 50
HELIX 28 162 47
COLOUR_TEXT_REGION 28 162 47 162 50
HELIX 51 162 71
COLOUR_TEXT_REGION 51 162 71 162 50
HELIX 2 163 20
COLOUR_TEXT_REGION 2 163 20 163 50
HELIX 26 163 47
COLOUR_TEXT_REGION 26 163 47 163 50
HELIX 51 163 57
COLOUR_TEXT_REGION 51 163 57 163 50
HELIX 61 163 71
COLOUR_TEXT_REGION 61 163 71 163 50