SILENT_MODE BLOCK_FILE jp_mcHYXMb.concise.blc MAX_NSEQ 571 MAX_INPUT_LEN 573 OUTPUT_FILE jp_mcHYXMb.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 290 560 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 561 290 570 H SPACE SUB_CHARS 1 561 290 570 E SPACE SUB_CHARS 1 561 290 570 - SPACE STRAND 3 564 3 COLOUR_TEXT_REGION 3 564 3 564 51 STRAND 20 564 25 COLOUR_TEXT_REGION 20 564 25 564 51 STRAND 41 564 48 COLOUR_TEXT_REGION 41 564 48 564 51 STRAND 54 564 60 COLOUR_TEXT_REGION 54 564 60 564 51 STRAND 87 564 91 COLOUR_TEXT_REGION 87 564 91 564 51 STRAND 118 564 121 COLOUR_TEXT_REGION 118 564 121 564 51 STRAND 178 564 184 COLOUR_TEXT_REGION 178 564 184 564 51 STRAND 189 564 194 COLOUR_TEXT_REGION 189 564 194 564 51 STRAND 198 564 201 COLOUR_TEXT_REGION 198 564 201 564 51 STRAND 207 564 222 COLOUR_TEXT_REGION 207 564 222 564 51 STRAND 228 564 234 COLOUR_TEXT_REGION 228 564 234 564 51 STRAND 238 564 243 COLOUR_TEXT_REGION 238 564 243 564 51 STRAND 246 564 254 COLOUR_TEXT_REGION 246 564 254 564 51 STRAND 258 564 261 COLOUR_TEXT_REGION 258 564 261 564 51 STRAND 267 564 270 COLOUR_TEXT_REGION 267 564 270 564 51 STRAND 275 564 281 COLOUR_TEXT_REGION 275 564 281 564 51 STRAND 287 564 289 COLOUR_TEXT_REGION 287 564 289 564 51 HELIX 77 564 82 COLOUR_TEXT_REGION 77 564 82 564 50 HELIX 95 564 102 COLOUR_TEXT_REGION 95 564 102 564 50 HELIX 135 564 144 COLOUR_TEXT_REGION 135 564 144 564 50 STRAND 2 569 4 COLOUR_TEXT_REGION 2 569 4 569 51 STRAND 20 569 25 COLOUR_TEXT_REGION 20 569 25 569 51 STRAND 42 569 48 COLOUR_TEXT_REGION 42 569 48 569 51 STRAND 54 569 60 COLOUR_TEXT_REGION 54 569 60 569 51 STRAND 87 569 91 COLOUR_TEXT_REGION 87 569 91 569 51 STRAND 119 569 121 COLOUR_TEXT_REGION 119 569 121 569 51 STRAND 168 569 169 COLOUR_TEXT_REGION 168 569 169 569 51 STRAND 178 569 184 COLOUR_TEXT_REGION 178 569 184 569 51 STRAND 189 569 194 COLOUR_TEXT_REGION 189 569 194 569 51 STRAND 198 569 200 COLOUR_TEXT_REGION 198 569 200 569 51 STRAND 207 569 222 COLOUR_TEXT_REGION 207 569 222 569 51 STRAND 228 569 234 COLOUR_TEXT_REGION 228 569 234 569 51 STRAND 238 569 243 COLOUR_TEXT_REGION 238 569 243 569 51 STRAND 246 569 254 COLOUR_TEXT_REGION 246 569 254 569 51 STRAND 258 569 261 COLOUR_TEXT_REGION 258 569 261 569 51 STRAND 267 569 270 COLOUR_TEXT_REGION 267 569 270 569 51 STRAND 275 569 281 COLOUR_TEXT_REGION 275 569 281 569 51 STRAND 287 569 289 COLOUR_TEXT_REGION 287 569 289 569 51 HELIX 77 569 81 COLOUR_TEXT_REGION 77 569 81 569 50 HELIX 95 569 102 COLOUR_TEXT_REGION 95 569 102 569 50 HELIX 135 569 144 COLOUR_TEXT_REGION 135 569 144 569 50 STRAND 20 570 25 COLOUR_TEXT_REGION 20 570 25 570 51 STRAND 41 570 48 COLOUR_TEXT_REGION 41 570 48 570 51 STRAND 54 570 59 COLOUR_TEXT_REGION 54 570 59 570 51 STRAND 88 570 91 COLOUR_TEXT_REGION 88 570 91 570 51 STRAND 118 570 121 COLOUR_TEXT_REGION 118 570 121 570 51 STRAND 177 570 184 COLOUR_TEXT_REGION 177 570 184 570 51 STRAND 189 570 194 COLOUR_TEXT_REGION 189 570 194 570 51 STRAND 199 570 201 COLOUR_TEXT_REGION 199 570 201 570 51 STRAND 207 570 222 COLOUR_TEXT_REGION 207 570 222 570 51 STRAND 228 570 234 COLOUR_TEXT_REGION 228 570 234 570 51 STRAND 238 570 243 COLOUR_TEXT_REGION 238 570 243 570 51 STRAND 246 570 254 COLOUR_TEXT_REGION 246 570 254 570 51 STRAND 259 570 261 COLOUR_TEXT_REGION 259 570 261 570 51 STRAND 267 570 270 COLOUR_TEXT_REGION 267 570 270 570 51 STRAND 275 570 281 COLOUR_TEXT_REGION 275 570 281 570 51 STRAND 287 570 289 COLOUR_TEXT_REGION 287 570 289 570 51 HELIX 78 570 82 COLOUR_TEXT_REGION 78 570 82 570 50 HELIX 95 570 102 COLOUR_TEXT_REGION 95 570 102 570 50 HELIX 136 570 143 COLOUR_TEXT_REGION 136 570 143 570 50