SILENT_MODE BLOCK_FILE jp_6kT0w4P.concise.blc MAX_NSEQ 739 MAX_INPUT_LEN 741 OUTPUT_FILE jp_6kT0w4P.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 61 728 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 729 61 738 H SPACE SUB_CHARS 1 729 61 738 E SPACE SUB_CHARS 1 729 61 738 - SPACE STRAND 5 732 9 COLOUR_TEXT_REGION 5 732 9 732 51 STRAND 15 732 17 COLOUR_TEXT_REGION 15 732 17 732 51 STRAND 30 732 31 COLOUR_TEXT_REGION 30 732 31 732 51 HELIX 37 732 47 COLOUR_TEXT_REGION 37 732 47 732 50 HELIX 53 732 59 COLOUR_TEXT_REGION 53 732 59 732 50 STRAND 5 737 9 COLOUR_TEXT_REGION 5 737 9 737 51 STRAND 15 737 17 COLOUR_TEXT_REGION 15 737 17 737 51 STRAND 30 737 32 COLOUR_TEXT_REGION 30 737 32 737 51 HELIX 37 737 47 COLOUR_TEXT_REGION 37 737 47 737 50 HELIX 53 737 59 COLOUR_TEXT_REGION 53 737 59 737 50 STRAND 4 738 10 COLOUR_TEXT_REGION 4 738 10 738 51 STRAND 15 738 17 COLOUR_TEXT_REGION 15 738 17 738 51 STRAND 30 738 31 COLOUR_TEXT_REGION 30 738 31 738 51 HELIX 37 738 47 COLOUR_TEXT_REGION 37 738 47 738 50 HELIX 53 738 59 COLOUR_TEXT_REGION 53 738 59 738 50