SILENT_MODE
BLOCK_FILE jp_YGxYGwz.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_YGxYGwz.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 144 30   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 31 144 40 H SPACE
SUB_CHARS 1 31 144 40 E SPACE
SUB_CHARS 1 31 144 40 - SPACE
HELIX 6 34 46
COLOUR_TEXT_REGION 6 34 46 34 50
HELIX 50 34 66
COLOUR_TEXT_REGION 50 34 66 34 50
HELIX 72 34 94
COLOUR_TEXT_REGION 72 34 94 34 50
HELIX 99 34 100
COLOUR_TEXT_REGION 99 34 100 34 50
HELIX 103 34 128
COLOUR_TEXT_REGION 103 34 128 34 50
HELIX 132 34 142
COLOUR_TEXT_REGION 132 34 142 34 50
HELIX 6 39 46
COLOUR_TEXT_REGION 6 39 46 39 50
HELIX 51 39 66
COLOUR_TEXT_REGION 51 39 66 39 50
HELIX 72 39 94
COLOUR_TEXT_REGION 72 39 94 39 50
HELIX 99 39 100
COLOUR_TEXT_REGION 99 39 100 39 50
HELIX 103 39 129
COLOUR_TEXT_REGION 103 39 129 39 50
HELIX 132 39 142
COLOUR_TEXT_REGION 132 39 142 39 50
HELIX 6 40 24
COLOUR_TEXT_REGION 6 40 24 40 50
HELIX 28 40 46
COLOUR_TEXT_REGION 28 40 46 40 50
HELIX 49 40 57
COLOUR_TEXT_REGION 49 40 57 40 50
HELIX 61 40 66
COLOUR_TEXT_REGION 61 40 66 40 50
HELIX 70 40 93
COLOUR_TEXT_REGION 70 40 93 40 50
HELIX 103 40 128
COLOUR_TEXT_REGION 103 40 128 40 50
HELIX 132 40 142
COLOUR_TEXT_REGION 132 40 142 40 50