QUERY                  : MSEIDANYRALAQQVADKVAGRVIALDRLPESLLTAYRSLCDELLADRDGRFTRAWDQLPDSASSLFERCVFHGFYLANAWIQLSIVARDISELQDTDEAIAEQEYSGLYVRVAEAALKESVKKLKKARTDRSMYNSMREVMGI : QUERY 
UniRef90_A8H7G9        : MTEVTQAYRDRAEQVALNVCNTVMPMNDIPEGLFEAYANLCNELIEDTDLKFSAGWDALPASAKGLLPREDFHGFYIANAWFQLSRVAQDIAEMAETDDEIAEKEYNGIFTRLADASLKESVRKLKKARTDRSMLNSIKTVIA- : UniRef90_A8H7G9
UniRef90_D4ZBM7        : MIEITPEYKARVEQVSLNVCNVVIPMDKIPENLLEAYANLCNELLEDTDEKFIKGWQALPSSARAQLPQADFHGFYIANAWIQLSRVAQDISEAADSEEAIDEKEYNGIFTRISDDSLKDCTKKLKKSRTDRALFNSIMAVV-- : UniRef90_D4ZBM7
UniRef90_A0KT68        : MAEVSVEYRETAERISHNVANKVLPMAKMPESLLAAYQGLCAELLLDREDKFATAWEALPASARNLMPQAEFHGFYIANAWLQLSRVAQEISEQADTDEAINENEYNGIFGRLADESLKECVRKLKKARTDRSMLNSFKQVMA- : UniRef90_A0KT68
UniRef90_Q086Y0        : MTKVDPQYQEVAKQISYNVANKVLPMDKLPETLLEAYEGLFTELIEDKANTFTHAWDALPASAQKLMTKAEFHGFYIANAWMQLSRVAQEIADSADSEEEMNNNEYDGVFGRLAEQSLKECLRKLKKARTDRPLLNSFKLVMS- : UniRef90_Q086Y0
UniRef90_UPI00046EBD7F : MTTISPEYQARVEQVAFNVCAVVLPMDQLPEGLVEAYQNLLAELLEDNSAAFANAWQQLPTSAQALLPQADFHGFYIAQAWLQLSRVAQDIADMADSEDAINEQEYDGIFSRLAVASLKESVRKLKKARTDRSMLNSMKQVIG- : UniRef90_UPI00046EBD7F
UniRef90_A3QH94        : MSKPSQEYQAIAEQASLNVCNTVIPMDKVPANLLEAYANLFNELLSDEEEKFAAAWNALPASAKGLIGQAEFHGFYIANSWLQLSRVAQDIAELADSDEAIEEKEYNNIFTRLADASLKESVKKLKKARTDRALLNSIKAVIA- : UniRef90_A3QH94
UniRef90_UPI00046AC7C3 : MTQVDAQYRQQARSAAINICSQVLPMDKLPTALKEAYDNLFEELLDDKQSEFKQAWDKLPPSAAKLLPRADFHGFFIASAWLQLSLMAQDIAQLADTDEAIAEKEYGGMFERISQSALKESVRKLKKARTDRRLLNSIRDVIA- : UniRef90_UPI00046AC7C3
UniRef90_L8JDR8        : MSEIEKKEEQTVEEVAFTLCSQVVEFEQVPEELLDMLVNVYKA----SEDISHEAWNQLPASAQNVLDN--FEQFHSLIALSQSYSGVDFLGEMQETPEGMTDDEFAEYKAVMLDQVLHNCVKQLKKARRHPPMKREFQEIF-- : UniRef90_L8JDR8
UniRef90_A5EZZ5        : ---------------------QVLEFDQVPEAMF----HMVTSIHEVSEEVVREAWDSLPASAQNILDNEQFHALISVSQAFAGLNVMEEFPTL-NLPKEMSEEDKDAYRAQLLDQVLHNCVKQIKKARRDPILKRDFKDVFA- : UniRef90_A5EZZ5
UniRef90_F9RY02        : MSDVTPNEKKIVDLSTVSALRQVIEFDGVPEAMYE----MVVSIHEVSEEAVRGSWDQLPKSAQNILDNEQFHALVSVSQAFAGLNVMEEFPTL-NLPKDMTDAEKDDYRASLLDQVLHNCVKQLKKARRDPILKRDFTDVYA- : UniRef90_F9RY02
UniRef90_U3A0S6        : MSDTNQTEQQTVETISPEL-RQVIEFDQVPEAM----HFMVSSIHEVSEEAVREAWDSLPASAQNVLDNEQFHSLISVSQAFAGVNVMEEFPTL-NLPKEMTEEQKEQYRAELLDEVLHNCVKQIKKARRDPILKKDFKDVF-- : UniRef90_U3A0S6
UniRef90_L0I4Y8        : ---------------------KVIEFDEVPEQMFE----MVTSIHEVSEEAVRASWDEMPASAQNILDNEQFHALVSVGQAFAGINVMEEFPTL-NLPENMTDEDKEEYRSQLLDNVLHNCVKQLKKARRDPILKREFKEVFA- : UniRef90_L0I4Y8
UniRef90_Q6LJI3        : MSEIETKDEQLVNEPTLTLCSQVVAFEEVPEELMDMLISVY----MVSEPTSREAWNSMPGSAQNVLDN--FEQFHALVALSQSYSGVDFLGEMQETPDHMSEEEQQEYKAVLLDKVLHNCLKQLKQARRNPPMKREFQEIF-- : UniRef90_Q6LJI3
UniRef90_A6D378        : ---------------------QVITFDDVPEEL----HNMVVSIHEVTEEAVREAWDTLPASAQNILDNEQFHALISVSQAFAGVSTMEEFTTM-DFPADMTDEEKEDYRAQLLDKVLRDMVKQIKKARRDAILKRDFKEVF-- : UniRef90_A6D378
UniRef90_UPI0003946149 : ---------------------QVILFDDVPQEMFT----MIASIHEVSEETVREAWNSLPASAQNILDNEQFHALISVSQAFAGIETMEGIAGM-DLPASMDDQAKEDYRAQMLDQVLKDMVKQLKKARRDPILKREFIEVF-- : UniRef90_UPI0003946149
UniRef90_V5FKI4        : MSEIIEDQTIDLSEVSAEL-RQVIEFDEVPEQMFQ----MVVSIHEAGEEEVRKAWNELPASAQNVVDNEQFHALTSVSQSFAGVGLLEEFPTL-NIPENMTEEETNNYKAQLLDQVLKDMVKQMKKARRDPILKRDFNNVF-- : UniRef90_V5FKI4
UniRef90_D0Z370        : MSDIEKKDEQVIEEVQFTLCSKIIEVEEVPAELHDMLINVYK----VSEPTTLEVWNALPKSAQNVLDN--FEQFHALVALSQTYSGVDFLGEMQETPEDMGAEEQANYKATMLDKVLHNCVKQLKKARQNPPMKREFQEIF-- : UniRef90_D0Z370
UniRef90_B8K718        : ---------------------------------------------------VREAWNELPKSAQNVLDNEQFHALISVSQAFAGLNVMEEFPTL-NLPEGMTEEQKEEYRAQLLDQVLHNCVKQIKKARRDPILKRDFTDVFA- : UniRef90_B8K718
UniRef90_B5ETS9        : MSEVENTQKEAIETISPEL-KKVIEFENVPEEMW----HMLVSVHEVAEIAVRESWDAMPASAQKVLDNEQFHALVSLSQSYAGYDFMAEF-ENLDLPENMDEDAQAEYRSQLLDQVLHNCVKQIKKARRDPIMKRELAEIF-- : UniRef90_B5ETS9
UniRef90_UPI0002DBB6E1 : ----------------------LIEFEQVPEQAIP----MVTSIHEVSEEPVRDVWDELPASAQNILDNEQFHALISIGQTFAAIDFMQEFETL-NMPADMDEAGQADYRASLLDKVLKDMVKQLKKARRDPILKRDFMEIFA- : UniRef90_UPI0002DBB6E1
UniRef90_E3BKH1        : ---------------------QVIEFDDVPETM----HSMVIAIHEAAEEAVREAWDTLPVSAQNVLDNEQFHALVSVGQAFAGLNVMEEFPSIK-LPEEMDEQQQEQYRAQLLDQVLKDMVKQIKKARRDPILKKDFVQVF-- : UniRef90_E3BKH1
UniRef90_R1J0M6        : MSEQANQTQETVKLEDLSALQQVIKYEQVPAELFTMLA----SIHEASESVVREAWDTMPASAQNILDNEQFHALVSLSQSYAGLDFMQETQDMKFDD--MDEEQTAEYKAVLLDKLLHNCVKQLKQARLKPAMKREFREIF-- : UniRef90_R1J0M6
UniRef90_UPI0002DC52F6 : ---------------------QVIKYEKVPVELF----NMLASVHEASEDVVRETWNTMPASAQNILDN--FEQFHALVSLSQSYAGIDFMTEAQDMKDDMTDEQTQDYKAGLLDKLLHNCVKQLKQARLKPVMKREFREIF-- : UniRef90_UPI0002DC52F6
UniRef90_A8TC93        : ------------------------------------------------------------ASAQNILDNEQFHALVSVGQAFAGLNVMEEFPTLK-LPENMTDEDKEDYRSQLLDNVLHNCVKQLKKARRDPLLKREFKEVF-- : UniRef90_A8TC93
UniRef90_UPI00046F9400 : ----------------------VIRYEQAPEAMYAMIASV----HDASSSSVKEAWEILPASAQNILDNYD--QFHALVAISQSYAGIDALSELEKVDSDMSDEAKENYKAQVLDDVLSSCVKQLKQARLKPGLKREFQAIF-- : UniRef90_UPI00046F9400
UniRef90_E1SSL2        : ---------------------QVLEFMGTPEAQHEAVFAVYNAV----EGPLRHAWEAQPQSARNIMDS--FEQFQAVVAFTLVGPTAELLAEQNAEGEERNDEQANAMMEQLLQQGIKMMVKDLKSARRNASLRNEFQAPF-- : UniRef90_E1SSL2

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141- :
OrigSeq                : MSEIDANYRALAQQVADKVAGRVIALDRLPESLLTAYRSLCDELLADRDGRFTRAWDQLPDSASSLFERCVFHGFYLANAWIQLSIVARDISELQDTDEAIAEQEYSGLYVRVAEAALKESVKKLKKARTDRSMYNSMREVMGI : OrigSeq

Jnet                   : -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-- : Jnet
jhmm                   : -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-- : jhmm
jpssm                  : -----HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-- : jpssm

Lupas 14               : ------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 14
Lupas 21               : --------------------------------------------------------------------------------------------------------------ccccccccccccccccccccc------------- : Lupas 21
Lupas 28               : ------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 28

Jnet_25                : ---B---B---B--BBB-BB--BB-B--BB--BB-BB--BB--BB-B----B--BB--BB-BB--BB--B-BBBBBBBBBBBBBB-BB--B--B------B----B--BB--BB--BB--BB--B--B-----BB--B--BB-- : Jnet_25
Jnet_5                 : -----------B------BB--B--B------B--BB--BB--B-------B----------B--------B--B-BB-BB--B---B--B---------------------B----B---B--B--------B---B------ : Jnet_5
Jnet_0                 : ---------------------------------------B----------------------B--------------B------------------------------------------------------------------ : Jnet_0
Jnet Rel               : 999727999999999886887632313343899999999999987446119998751312666642361428999999999999868986430235650133233676899999999999999998601866899999987289 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.