SILENT_MODE
BLOCK_FILE jp_DwASsbJ.concise.blc
MAX_NSEQ 790
MAX_INPUT_LEN 792
OUTPUT_FILE jp_DwASsbJ.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 107 779   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 780 107 789 H SPACE
SUB_CHARS 1 780 107 789 E SPACE
SUB_CHARS 1 780 107 789 - SPACE
STRAND 57 783 57
COLOUR_TEXT_REGION 57 783 57 783 51
STRAND 95 783 96
COLOUR_TEXT_REGION 95 783 96 783 51
HELIX 7 783 17
COLOUR_TEXT_REGION 7 783 17 783 50
HELIX 25 783 33
COLOUR_TEXT_REGION 25 783 33 783 50
HELIX 39 783 50
COLOUR_TEXT_REGION 39 783 50 783 50
HELIX 59 783 69
COLOUR_TEXT_REGION 59 783 69 783 50
HELIX 78 783 89
COLOUR_TEXT_REGION 78 783 89 783 50
HELIX 97 783 105
COLOUR_TEXT_REGION 97 783 105 783 50
STRAND 23 788 23
COLOUR_TEXT_REGION 23 788 23 788 51
STRAND 56 788 58
COLOUR_TEXT_REGION 56 788 58 788 51
STRAND 95 788 97
COLOUR_TEXT_REGION 95 788 97 788 51
HELIX 7 788 17
COLOUR_TEXT_REGION 7 788 17 788 50
HELIX 24 788 33
COLOUR_TEXT_REGION 24 788 33 788 50
HELIX 39 788 50
COLOUR_TEXT_REGION 39 788 50 788 50
HELIX 59 788 69
COLOUR_TEXT_REGION 59 788 69 788 50
HELIX 78 788 89
COLOUR_TEXT_REGION 78 788 89 788 50
HELIX 98 788 105
COLOUR_TEXT_REGION 98 788 105 788 50
HELIX 7 789 17
COLOUR_TEXT_REGION 7 789 17 789 50
HELIX 25 789 33
COLOUR_TEXT_REGION 25 789 33 789 50
HELIX 39 789 49
COLOUR_TEXT_REGION 39 789 49 789 50
HELIX 59 789 69
COLOUR_TEXT_REGION 59 789 69 789 50
HELIX 78 789 88
COLOUR_TEXT_REGION 78 789 88 789 50
HELIX 98 789 105
COLOUR_TEXT_REGION 98 789 105 789 50