SILENT_MODE BLOCK_FILE jp_nbNuD8o.concise.blc MAX_NSEQ 122 MAX_INPUT_LEN 124 OUTPUT_FILE jp_nbNuD8o.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 113 111 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 112 113 121 H SPACE SUB_CHARS 1 112 113 121 E SPACE SUB_CHARS 1 112 113 121 - SPACE STRAND 38 115 40 COLOUR_TEXT_REGION 38 115 40 115 51 STRAND 46 115 48 COLOUR_TEXT_REGION 46 115 48 115 51 STRAND 95 115 99 COLOUR_TEXT_REGION 95 115 99 115 51 HELIX 4 115 18 COLOUR_TEXT_REGION 4 115 18 115 50 HELIX 25 115 34 COLOUR_TEXT_REGION 25 115 34 115 50 HELIX 37 115 37 COLOUR_TEXT_REGION 37 115 37 115 50 HELIX 52 115 65 COLOUR_TEXT_REGION 52 115 65 115 50 HELIX 72 115 87 COLOUR_TEXT_REGION 72 115 87 115 50 HELIX 100 115 106 COLOUR_TEXT_REGION 100 115 106 115 50 STRAND 37 120 40 COLOUR_TEXT_REGION 37 120 40 120 51 STRAND 46 120 48 COLOUR_TEXT_REGION 46 120 48 120 51 STRAND 95 120 99 COLOUR_TEXT_REGION 95 120 99 120 51 HELIX 4 120 18 COLOUR_TEXT_REGION 4 120 18 120 50 HELIX 23 120 33 COLOUR_TEXT_REGION 23 120 33 120 50 HELIX 52 120 65 COLOUR_TEXT_REGION 52 120 65 120 50 HELIX 72 120 86 COLOUR_TEXT_REGION 72 120 86 120 50 HELIX 100 120 106 COLOUR_TEXT_REGION 100 120 106 120 50 STRAND 38 121 40 COLOUR_TEXT_REGION 38 121 40 121 51 STRAND 46 121 48 COLOUR_TEXT_REGION 46 121 48 121 51 STRAND 96 121 99 COLOUR_TEXT_REGION 96 121 99 121 51 HELIX 4 121 18 COLOUR_TEXT_REGION 4 121 18 121 50 HELIX 25 121 34 COLOUR_TEXT_REGION 25 121 34 121 50 HELIX 52 121 65 COLOUR_TEXT_REGION 52 121 65 121 50 HELIX 72 121 88 COLOUR_TEXT_REGION 72 121 88 121 50 HELIX 100 121 107 COLOUR_TEXT_REGION 100 121 107 121 50